GgaALTA0003419-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000006598 | SORL1
Description
NA
Coordinates
chr24:3534721-3535177:-
Coord C1 exon
chr24:3535095-3535177
Coord A exon
NA
Coord C2 exon
chr24:3534721-3534817
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GTGCCATCACTGCTTGACAGGTC
3' ss Score
6.75
Exon sequences
Seq C1 exon
TCATTCCTCCACCTGTCATACGCATTGAGGGCTACACTGAGGACTCCATAAGCTTCAGTCTGAAAATGAATACTAATATCAAG
Seq A exon
NA
Seq C2 exon
GTCAGCGGTTACGTTGTCAACATCTACTGGACATTTGATGCACACAGGCAGGAAAGAAGAACTCTGACCATAGAAGGAGAAAAGTCAGTCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598-38-45,38-44-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCTCCACCTGTCATACGC
R:
TTTTTGGACTGACTTTTCTCCTTCT
Band lengths:
178-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]