GgaALTA0003419-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006598 | SORL1
Description
sortilin-related receptor, L(DLR class) A repeats containing [Source:HGNC Symbol;Acc:HGNC:11185]
Coordinates
chr24:3491597-3492053:-
Coord C1 exon
chr24:3491971-3492053
Coord A exon
NA
Coord C2 exon
chr24:3491597-3491693
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
GTGCCATCACTGCTTGACAGGTC
3' ss Score
6.75
Exon sequences
Seq C1 exon
TCATTCCTCCACCTGTCATACGCATTGAGGGCTACACTGAGGACTCCATAAGCTTCAGTCTGAAAATGAATACTAATATCAAG
Seq A exon
NA
Seq C2 exon
GTCAGCGGTTACGTTGTCAACATCTACTGGACATTTGATGCACACAGGCAGGAAAGAAGAACTCTGACCATAGAAGGAGAAAAGTCAGTCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006598-41-57,41-56-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.091
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCCTCCACCTGTCATACGC
R:
TTTTTGGACTGACTTTTCTCCTTCT
Band lengths:
178-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]