GgaALTA0003484-5/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006702 | MFGE8
Description
lactadherin isoform 2 precursor [Source:RefSeq peptide;Acc:NP_001264040]
Coordinates
chr10:12529742-12530747:+
Coord C1 exon
chr10:12529742-12529886
Coord A exon
chr10:12530545-12530619
Coord C2 exon
chr10:12530620-12530747
Length
75 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
TATAAACCGTTGTGTTACAGTGT
3' ss Score
6.46
Exon sequences
Seq C1 exon
GTTTTCCAGGGCAACGTGGACTACGGCACCATGCAGACCAACATGTTTGACCCTCCCATCACAGCGCAGTACATCCGCATCTACCCCGTGGTGTGCCGCCGTGCCTGCACGCTGCGCCTCGAGCTCATCGGCTGCGAGATGAATG
Seq A exon
TGTATTTCAACACGGCAGGTTGCTCGGAGCCTCTGGGCATGAAATCCCGCCTGATCTCTGACCAGCAGATCACAG
Seq C2 exon
CTTCCAGCGTCTTCAAGACATGGGGCATTGATGCCTTTACCTGGTATCCCCATTATGCCCGCCTGGACAAGATGGGCAAGACGAATGCATGGACAGCACTGCACAATGACCAGTCCGAGTGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702-13-19,13-18,13-17,13-16,13-15-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
NA
C2:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACCCTCCCATCACAGC
R:
GTCTTGCCCATCTTGTCCAGG
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]