GgaALTA0003484-4/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000006702 | MFGE8
Description
lactadherin isoform 2 precursor [Source:RefSeq peptide;Acc:NP_001264040]
Coordinates
chr10:12529742-12530747:+
Coord C1 exon
chr10:12529742-12529886
Coord A exon
chr10:12530563-12530619
Coord C2 exon
chr10:12530620-12530747
Length
57 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
3' ss Seq
AGTGTATTTCAACACGGCAGGTT
3' ss Score
3.26
Exon sequences
Seq C1 exon
GTTTTCCAGGGCAACGTGGACTACGGCACCATGCAGACCAACATGTTTGACCCTCCCATCACAGCGCAGTACATCCGCATCTACCCCGTGGTGTGCCGCCGTGCCTGCACGCTGCGCCTCGAGCTCATCGGCTGCGAGATGAATG
Seq A exon
GTTGCTCGGAGCCTCTGGGCATGAAATCCCGCCTGATCTCTGACCAGCAGATCACAG
Seq C2 exon
CTTCCAGCGTCTTCAAGACATGGGGCATTGATGCCTTTACCTGGTATCCCCATTATGCCCGCCTGGACAAGATGGGCAAGACGAATGCATGGACAGCACTGCACAATGACCAGTCCGAGTGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006702-13-19,13-18,13-17,13-16,13-15-4/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
NA
C2:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGGCTGCGAGATGAATG
R:
CCACTCGGACTGGTCATTGTG
Band lengths:
143-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]