DreALTA0016884-1/2 @ danRer10
Alternative 3'ss
Gene
ENSDARG00000045803 | mfge8b
Description
milk fat globule-EGF factor 8 protein b [Source:ZFIN;Acc:ZDB-GENE-070209-137]
Coordinates
chr25:19082146-19083544:+
Coord C1 exon
chr25:19082146-19082290
Coord A exon
NA
Coord C2 exon
chr25:19083360-19083544
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
3' ss Seq
AGTGTATTTGAACACGACAGGTT
3' ss Score
2.02
Exon sequences
Seq C1 exon
ATTTTTGTTGGTAACATGGACAATGATGGGACAAAGACGAATTTGTTCGAGCCTCCAATCATCGCTCAGTTCCTCCGGATTGTTCCTGTGGTGTGCCGTAAAGCCTGTACTCTGAGAATGGAGCTGGTCGGCTGTGAACTCAACG
Seq A exon
NA
Seq C2 exon
GTTGCTCCGAGCCGCTCGGCGTCAAGTCTCGGCTCATCAGTGACCGGCAGATGACATCGTCCAGCGCTTTCCGCACCTGGGGCATTGAGGCCTTCACCTGGCACCCGCATTACGCCCGTCTGGACAAACAGGGCAAGACCAACGCCTGGACGGCAGCTACAAACAACCGCTCCGAGTGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045803-7-8,7-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.5=83.7)
A:
NA
C2:
PF0075420=F5_F8_type_C=PU(32.1=72.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGATTGTTCCTGTGGTG
R:
CTGATGAGCCGAGACTTGACG
Band lengths:
113-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]