MmuALTA1021646-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000030605 | Mfge8
Description
milk fat globule-EGF factor 8 protein [Source:MGI Symbol;Acc:MGI:102768]
Coordinates
chr7:79136657-79141789:-
Coord C1 exon
chr7:79141645-79141789
Coord A exon
chr7:79136724-79136841
Coord C2 exon
chr7:79136657-79136723
Length
118 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
ACAGCCCCTTTTGCCCACAGGAT
3' ss Score
10.09
Exon sequences
Seq C1 exon
GAGTTTTTGGGTAACCTGGACAACAACAGCCTGAAGGTTAACATGTTCAACCCGACTCTGGAGGCACAGTACATAAAGCTGTACCCTGTTTCGTGCCACCGCGGCTGCACCCTCCGCTTCGAGCTCCTGGGCTGTGAGTTGCACG
Seq A exon
GATGTTCTGAGCCCCTGGGCCTGAAGAATAACACAATTCCTGACAGCCAGATGTCAGCCTCCAGCAGCTACAAGACATGGAACCTGCGTGCTTTTGGCTGGTACCCCCACTTGGGAAG
Seq C2 exon
GCTGGATAATCAGGGCAAGATCAATGCCTGGACGGCTCAGAGCAACAGTGCCAAGGAATGGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030605-21-21,21-20-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.014
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PD(29.7=83.7)
A:
NA
C2:
PF0000822=EGF=PD(10.0=13.0)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAACCTGGACAACAACAGC
R:
CACTGTTGCTCTGAGCCGTC
Band lengths:
186-304
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types