GgaALTA0004688-2/5 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:922922-923564:-
Coord C1 exon
chr17:923445-923564
Coord A exon
chr17:922964-923017
Coord C2 exon
chr17:922922-922963
Length
54 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCATCAGCCTCTCTCCGCAGTAC
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATGGAGTACAAAGGCAAGGTTGTCGCAGGTCTCCTGACAGCCACCTGTGTCTTCAGCATCATTGCCCTCATTCTGAGTGCTGTAGATGTGAAGGATGTGTTTCTGCCTCCTGGCACGAAG
Seq A exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTATGTCTACCAG
Seq C2 exon
TGGCCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932-0-5,0-4,0-3,0-2,0-1-2/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.2=12.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAAGGCAAGGTTGTCGCA
R:
GTTCTCCTTGTCTGCAGGCC
Band lengths:
135-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]