GgaINT1012330 @ galGal4
Intron Retention
Gene
ENSGALG00000008932 | ENTPD8
Description
ectonucleoside triphosphate diphosphohydrolase 8 [Source:RefSeq peptide;Acc:NP_989578]
Coordinates
chr17:922900-923564:-
Coord C1 exon
chr17:923445-923564
Coord A exon
chr17:923018-923444
Coord C2 exon
chr17:922900-923017
Length
427 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
CCATCAGCCTCTCTCCGCAGTAC
3' ss Score
7.7
Exon sequences
Seq C1 exon
ATGGAGTACAAAGGCAAGGTTGTCGCAGGTCTCCTGACAGCCACCTGTGTCTTCAGCATCATTGCCCTCATTCTGAGTGCTGTAGATGTGAAGGATGTGTTTCTGCCTCCTGGCACGAAG
Seq A exon
GTAAAGTCTTTGGCAGAAGCGCATCTGCCTTCTCTCACTTGGGTGTTGGCTAACCTCTATTCTGAGATTTTCCCCAGCTTTAGGCAGTCTGTGCAGTTATTCACCAAGATGGGGACAAACTGCCGTGCAGGCTGGCACATCGAGTGGGTCTGTCACAGTTTTCTTGCTTACAGCACATACAGCCTTTTCACTGCAGAGAACCAAGGAAACCTACCTACTAGCTCACACAGAGCTTTGGCCTCAGTACAGCTGGTGACTGCAATGTCACACTTTCCCTGCTCCAGTGACACTCTTGGCTTGGTCATATGAGCCACTCCCTGCCCACTGGGAGCTCTGCCCGCTCACCTGGAGCTCTCCTAGCTCTGCAGCCAGCTAAATCTGCTTTTCACCCCCTGGCACCCTGCATCCCATCAGCCTCTCTCCGCAG
Seq C2 exon
TACGGCCTGGTGTTCGACGCCGGCTCCACGCACACGGCTCTCTATGTCTACCAGTGGCCTGCAGACAAGGAGAACGGCACGGGCATCGTCTCCCAGGTGGAGTCCTGCACTGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008932:ENSGALT00000014516:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.2=12.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTACAAAGGCAAGGTTGT
R:
CATTCACAGTGCAGGACTCCA
Band lengths:
238-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]