HsaINT0056487 @ hg19
Intron Retention
Gene
ENSG00000054179 | ENTPD2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:HGNC Symbol;Acc:3364]
Coordinates
chr9:139946683-139948505:-
Coord C1 exon
chr9:139948333-139948505
Coord A exon
chr9:139946801-139948332
Coord C2 exon
chr9:139946683-139946800
Length
1532 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
3' ss Seq
TCCCTCCCCCTCCCCCGCAGTAT
3' ss Score
10.17
Exon sequences
Seq C1 exon
CCGGCTCCCCGCACTCTCCGGGTCCACGCATCGTCCTCCCGCGCGCCCGCCCGCCCATGGCCGGGAAGGTGCGGTCACTGCTGCCGCCGCTGCTGCTGGCCGCCGCGGGCCTCGCCGGCCTCCTACTGCTGTGCGTCCCCACCCGCGACGTCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
GTGCGCGCCCGGGCACCCAGCGCACGTCTGGGGAGCAGCGGGCCGGGCTTGGAGCCGGGGAGGGGGTGCGGCTGGGAACCTGAGCAGGATCAGCCCGGGACCCCCACCGTGCTCTGCTCCTGGCGGGCTGGGTGGGGTCCCGGGTTCCGCGCTCTGCGCTCCCCGACCGGGTACGCGGAGGGGGCGGGGGGCGGTGGCGCTTCCAGGGCGACGCGGTGCTGAAGGAACAAGTCCCGGGAGTTCCGCGCCCGCCGCCGAGTCCGTCAACGCAGCCCAGGGGCTGTGTCCCCGCTCCCGGGATAGCCCAGCGATGCCCCCTGGGTGCTGCCGGACGCCCGCCCCCAGGCCTGTGCGGGCCCCCAGGGGCACTCCGGGCCACTTCTGCCCTGTGCCGCCGCCCCGGAGGGTGCGGTTAGAGCCACATCGACTGGGTATTCAGCCCAGATGGGGATCCACAAGCCCCAGGACCCAGGGCCCCCGCCAGGACACGAGAGTGGCCCAGAAAGACAGGAGGGCTTGACCGGAGCAGCCCTGGCCGGTCCTCAAAAGGTTGGAGCAGGCTAGCCTGGATCTCCACTCCAGCAGGCCCAGGGACCTCCTGGTCGGCCCCTTTAACCCTTTATTGGGCTTGTAGGGGGGTGGGGTGGAGAGCCAAGTCCCCCAGCCTGATGGGGAGTCAGAAGCAGGGAGCTCTGCGGCCCTGCAGGACGGCCATGTGGCGGTGCACGCGCTGACCTGTTGATGCTCTGGGCTCTGGGGAAGCCTTGGTCGGGATGGACTGGTGCGGCCCTCTCGGAGGCTGGAATTGGCGCCCGGGCCTGGGAGGCTGGTCCCCAGCTTTCCAGGTGGATCCAGGATGCTGGGGCAGGAGCTGGAAAAGGGCATTTACAAGCTCGTGCCACTCAGGTCTGCAGGAAGGCCCACCCAGCACCCCCAACAAGGCAGGGCCAGCCTCTCTCTCTGGCCCTGGCTTGGAGGCCTAGGGAGAGTGTCTTTAGAGCTGACCTGGCTCTGAGGCCCACGGCCAGCCTCGGTGGACCTTCTTCACCTGGGGCCCTGCCTCCTGCATCCTCAGGTTGGGCTGCCGTCAGAGGAGCTGGAAGGAGACAGAGGAGGAAGGAAGAGGGGAGGAAGGAAGAGGGACTCTAGGGAGCTCCTCTTGCAGAGGAGCTTCCTCTCCCTGAGCCTGGGAAACTTGTGCCCCAGGGAAAAGTCCCTGGGGACCCTCTGTCCCTCTGTCCCTGACTCAGTCCCTCAGTCTGCCCTTGCCAGGAAGGCTGCTGCCCAGACCCTGGCATGCTGGCTTCAGGTAGTCAGGAGGGAAGAGTCACCTCCCCACCACCTCCCTGTTCTCCTTCCAACCACGGCCTCAGAGGAGGCCCTGGCCTCCTCTGAGCTTCAGCATGAGGCTTGGCACATGACTGGGTGGGGGGGGGAGCGGTGGCAAACTGGAGGAACCCAACTTCACGTTTGGTGTCAGGGTGTCAGGGCCCCCGGACACCCCAGGCTGACTCCCTCCCCCTCCCCCGCAG
Seq C2 exon
TATGGCATCGTCCTGGACGCTGGTTCTTCACACACGTCCATGTTTATCTACAAGTGGCCGGCAGACAAGGAGAACGACACAGGCATTGTGGGCCAGCACAGCTCCTGTGATGTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000054179-ENTPD2:NM_001246:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(2.3=20.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCCGGGTCCACGCATC
R:
CTGGAACATCACAGGAGCTGT
Band lengths:
278-1810
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)