GgaINT0125657 @ galGal3
Intron Retention
Gene
ENSGALG00000009058 | F1NGR8_CHICK
Description
NA
Coordinates
chr17:784834-789161:+
Coord C1 exon
chr17:784834-784970
Coord A exon
chr17:784971-789043
Coord C2 exon
chr17:789044-789161
Length
4073 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CGCCAAGGAGATAGAGGCAGTAT
3' ss Score
-21.52
Exon sequences
Seq C1 exon
AGCGGCAGCGCCCGCCCGGCCCCGCCATGGCCCGCCGGGCCGCCGCCGTGCTGCTGCTGCTTGCCCTCGGCTGCCTCCTGGGCATCCTCCTGCTCTGCCTCGGCTCCGGAGACGCGCGCGGCCCGCCGAGTTTCAAG
Seq A exon
GTGAGCGGGGGGGACCGCGCTGCGGGGCGGGGGTCCCGGGAGCGCCCCGAGAGCCGGGCAGCCCCTGCGGGGGGGGGGGGCGGCTCCGCGATGCGGGGCTCTCGCTGCGGTCCCCGAGCCGCTGCCGCGGGGTCGGAGCCGGGGACGGCGAGCCGGGCGCCTCCCGCTGCACTGCGGGGCGAGGAGGGCTCTGATCTGTGAGAACGAGCTGCTCTTTTTTTTTTTTTCATTGTGCATTCAGGCACTGAAGGAAGTTCCCAACCAACTCCTTGCTGGGGAAGTGCTCCAATTCAATCTACTCTTTTGCCACCCGGATCTTTTGTTTTAAAAAATCCCGTGTCCTCCAGGGACAGACAGTGCAGGCAGAGCAGGCTCCTGCCCTGGAAAATGGTTCACCCCAAACCTCTTTCTCACCCTAAGCTTTCTGAGCCGGCCTGGATGCCAGCTGTGTGTCTTCTCTCTGGGTTTGACCGTTGCAATAAAGATTAGGTTGAGAAAACGAGCAGGCTTCGCCGGGGTAATAGTCCCCACTTGTCAGTAGACTGTAATAATTAACTCTTTCCCTGTGACACATTGCTCTGCCGTGTGCTGTGGCATTTAGGACTGGGCTTATAGCTGTTTTCTGGATGGATTTCATCCCTTTGGACAGATGGATCCCTGCTGAGTCCCACCTGCAGCACTTTGGTCACTGTTCAAAGCCTGTTCTCCTGCAGTGGAAGCCAGAAGCCAGCTGTGCTCAGGGGATCCCTTTCTTCTCCCTGCAGGATGGGGCTGCACGCAGGTTCCCGAGGCTGAGCCCAGGGACCCGGGCTTTGCCCCATCTCTGGATGGAGCAAGCATAGTGATCCAGCACAGTGACCACAGTGGGGCCGTTGTCACCACGACACTGCCTTACAGCCACCCTGGAAGACAGCAGCTGTGTCCCCAGCCCCGGTTGGGGCAGGAGGAGGCTGACGCAGTGAAGCAGGGAGTGCCAGCCCCACAGCCACTCAGCAGCTCCCCAGCCTGTCTCATGCTGCTGTGGGACGAAGGTGCCCTTGGGGTGGGGGGGGAGGAGAGGGTGAGCTCCTGCTGCCCTCAGGATCAGCCGTGGGATCAGGCTCTGGGCGGTGGCAGGGTTGTGCTGTGGCCCTGCTCGGTCATGGCTGTGAGTGGGGGCTGCAGCCCATCCCACCCCGCTGCACATCACCGTACTTGGCGGCTTGGTTCCTCATTAGCAGCAACTGCTGGATGGTGGCTCAACTCACTGGCGTGCTAAGGTTAACCCGCAGCTCCACTTCTCCTTCCAGCTCCTTTGCTTGGAATATAGCCCTAAAAATACCCCAGATTATTTATTCTGCTGCCAAAGGGACTGATCTTGGGAGCGTGCTCTTCTCCTTCCCTTCTGGATACACAGCTGAACTTACAGCATTACAGCCTCACAGCTCTGAGCCGTTTTCTTTCCTTCTGTGGGATCAGCAGATCCTGCGGGTACACAGCCCAGCTGTCGCAGTGCCACCAGATGCTGGTGTTGTGGGACTGTCCCACGCTTTGGGGCCAGGGCCATGGGCGCGTGTGCAAAGCCGTGCCATCCGGGGTGCTTGTGGCCAGGGCAGAGCACAGGGGCTGTCACCATGGCAGGACTCGTCCCCAGGTGCCATGCAGGAGCTGTCAGAGCATGTACCCTGGGTCTCGAGGGCTCTGCCCTGTCTGAGAGGAGAGGGTCTGCCCCCGGAGGCTCTTAGAGCAAAGGGCGCAGGGACGTGCCTGCTGGGGGCAGTGGGTTCTGCAAACTGCTCCATGCTGTGACGCAGGTCTGATGCATCCCCCACACAGCAGCTCCAGGCTGCAGATGGGCTGGGGCTGCACAGAAATGGGACTTCAGTGCGTGTCCCCAAGTAGCACTTCTCCCCAGCTTCTGCTCAGGGCGGGCACATAGGAAGTCAGCAGATGAAATGTGATTAAGAGGGTGGGATGCAGCCTCTATCTCCTTCACCCCCGCAGAGCTCAGGTCTTGCCCTTGGCATGGGGTCGGGGCTGCTGGCTCCAGGTCGCCCTGCATGGCAGCAAGGCCACAGGATCCTGCAGAGCGTGCCCGGCTCTCTGTGGGCCCCAGCAGGCAGCACAGCTGTCCCAGGCACACACAAGCCCACCATGGGACACACAAGCATGCCTATGCACACATGTACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGCATCTACAGTAAACGTGCCCACACATGCATCTTTTTGTACACATGCCCACGCACATATGCCCCCACCCGCATGCACTCCCCTGGAAGCTGGCAGCCAGCTCAGCCCCACACTGCGCTTTGTCCCTGGGCATTTTTCCCCTCCTACAGGTGCACAGGGCTTCTGCTGCCCGCCTGGCCCAGTCACCTGGGGCAACACTGGGGATGGCGTGGAGGACATCGGGCCCCTGGGCCACCTTCCTGCTGTCCACAGGGCTGGTGGGCACATACGTGGCACTGAGCAGCTGGGTGGTGCTGGGACCCTCCTGGAGACCCCCATTTGCAGGGCCATGTGGCCACAGACCACGGGCAGCCTGTCTGGGGGCCACGTGGGTGGTGGAGGGCTTCACAGCATGCAGGTAAAGCCCTTCTCCAGGCCACGTTTAGGATGGAGGTGGTCTCACCCCGGGGAGATGCTCAGCTGGGGCAGAGTGCTGTCCGCCTCCTGCCAGCAGCAGCGCAGCCCCGGTCGGTGCCGGACCCCCAGCGGTCCCATGCCCTCAGAGGGGTCTGGGGGCTGTGGGTGGGGTGGGCCGGGGTGGCTCCTCCCGGAGCCGTGTAACCGTGCATGGCGGGGGGAGAGGGGTTATTTATAGCCGGAGAATGGCCGAGCCTTACAAGGGCAGGCAGGGATGAGGTGGAAGGGTGCCCTTCTTTGGAGCTCCGGGTCCCGGCGCAGCTCAAAAGGGTCCTCCCGCCCGTCGGGGCAGCTCTCGGCGAGGGGAGCCCTGAATCCACCANNNNNNNNNNAGGAGGGTGATTTAATATGCCAGGAGAAATCGTACGAGTCATTACGAACGGGCACGGCAGGGATGACGGTGGTCGGAGCTGCCCATCTGTGGAGCTGCTGGGTTCCCAGGCGCAGCTGTCCAGTAGGTCATGCTTGCCTGTCGGCGACAGCTGTCTGCGATGGGGAGCCGTACAGCTGTGTCCCCCATGCGCGTGAGCACGCGAGACGTTGGGCATGCTCTGTGTGGATCCGGGTCGCGGATGGAGCCATGCAGTGCGCGGCGGGAGCCGTGCAGCGAGCACCGCATCTCACGTGCGAGAACGGACCGGCTGAGCGCCAAGGAGATAGAGGCAG
Seq C2 exon
TATCGCATCGTCTTAGTCGCCGGATCCTCCCACACGTCCGTGTTCATCTACAAGTGGAGAAGGGACAAGGAGAAGGACATTGGGGTGGTCAGCGAACACAGCATTTGTGACGTGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009058:ENSGALT00000014744:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.4=16.2)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]