RnoINT0055163 @ rn6
Intron Retention
Gene
ENSRNOG00000013102 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:RGD Symbol;Acc:69266]
Coordinates
chr3:2617805-2619434:+
Coord C1 exon
chr3:2617805-2618012
Coord A exon
chr3:2618013-2619316
Coord C2 exon
chr3:2619317-2619434
Length
1304 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
CCTACCACATCCACCCACAGTAC
3' ss Score
5.34
Exon sequences
Seq C1 exon
CCGCCCCCGCGTCTAACTCTGGGGCCCCGGCCACCCGGGCCTCCCCGCTGCCTGCTGTCCGGGGTCCCGCTGTGTTCTCCCACGCGTTCTCATGGCTGGAAAGTTGGTGTCACTGGTGCCACCCCTGCTGCTGGCTGCCGCGGGCCTCGCCGGCCTTCTGCTACTTTGCGTCCCTACCCAAGACGTCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
GTGCACGCGCTCACTGCGGCGCTGGGGAGTAGCTGGCCCCGGGGCTAGGGGGTGTCTGTCGGGGACTGTAGGTGCGCGCCAGAACGCCCTGCGCTCTCACACCAGCGCGGGACTGTGCCTCCGGCCGGGTCCTAGGTTCCTCACTTCGTTTTACTGGGTCCGCGGGGTGACGGCGACGCTTCCGGAGCCCCACGGCACTGGAAGCAAAGTTCGTGGGAATTCCCCTGTTGCAGCTTCGCGATGGAGCTGCCCGAGCGGCAGAGGGGCTTTCTTCCCGCTCCCTTCATGCGGTTCCCATCTTCCCTAGCTGTGGCAAGAACCCCCCTCCCCAAGTCCAGCGCCATTTCCGGGCAGCACCTTGAGCGCGCCGTTAGAGAAGGGCATTGGTTCTAGACTAAGCTCCAGATAAGGGACAACACTTACTATGGATCTCCAACCCCCCTCAGACCAAGGTCTGAACCGTGTCACTTGAAAGAGGGCAAAGGAAGCTCGCTGGTTCTAAAGGGGTCTCCATCACCAAATCTCAGCCACCTCAGGCTAGAGGATGAAGCCTTTAACCCTTTGTTGGTCTTTTGCTGAGTTTGTGTGGGGACCTAGACTGGAAGGGGTTGAGCTCTGTAGCCATGAGGGATGGACTGTGGGGTGTGGGAGTTGAATCACTGTATCTGCCTAGTTCTGGAGGAGTTCTTTGCTGTGAGGGAGGACCGGAGCAGCCCTTTCCCAGGCTAGAACTGGCACATGCCCCAGGTTGGTGTCCAGCCAGGCTCCCTCAGCTGGAGTCCAGCCCCTTGAAGCTGCAAAGAAGGCCCATCCAATGCCCTTCTCTGCTCTGCAAAAGCCTCTCCCTGTTCCTGGCTTTTAAGGCCCAGGCAGGGGCATGGATTGGAGACCTTCTACATTCAGCCCCAGTCACATACTTTCCCGGTAACCCTTGTTTCCACATCCCATGGTTAGGCTAAGGTTCCAGCAGATACACGCAGAGCGAGGAAGGAAGGAAGAATAGCCGTTGGCTTTGCTTCTCTTGAACAGAGCAAAGTTCCAAATGGGACCCCCTGCCCCTGGCACAGCCCCTCAGTTGCTGCTGCTAGGAAGTCTACTTTCTGGTGCCTGTCAGTGACAGCCTCAGGCAGTTGGGAGGGGGGCTGTCACGGCAGGGAGTCCTGCTCAGTCTCCTTTGAGCTGGAGCACTGTGAAAGCTCTTGGCTGCCCCTGAGCTTCAGCCTGTAATTGGATTCATAGCTGGTGGGAGTGGAGTGTGAAGGAGCCCCCCACCCATCAGGCTGACCTACCACATCCACCCACAG
Seq C2 exon
TACGGCATTGTCCTGGATGCGGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAGAATGACACAGGCATCGTGGGCCAGCACAGCTCTTGTGATGTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013102:ENSRNOT00000017829:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=20.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGCGTCTAACTCTGGGG
R:
CAAGAGCTGTGCTGGCCC
Band lengths:
310-1614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]