MmuINT0057670 @ mm10
Intron Retention
Gene
ENSMUSG00000015085 | Entpd2
Description
ectonucleoside triphosphate diphosphohydrolase 2 [Source:MGI Symbol;Acc:MGI:1096863]
Coordinates
chr2:25395874-25397513:+
Coord C1 exon
chr2:25395874-25396089
Coord A exon
chr2:25396090-25397395
Coord C2 exon
chr2:25397396-25397513
Length
1306 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCTC
5' ss Score
3.68
3' ss Seq
CCTACCACATCCACCCACAGTAT
3' ss Score
5.34
Exon sequences
Seq C1 exon
GTTACAGCCCCGCCCCGGAGCCTAACTCTGGGGCCCCGGCCACCGGGCCTCCCGCTGCCTGCTGTCCGGGGTCCCTGCTGTGTTCTCCCGCGTGCTCCCATGGCTGGAAAGTTGGTGTCACTGGTGCCACCCCTGCTGCTGGCTGCCGTGGGCCTCGCCGGCCTCCTGCTACTGTGCGTCCCTACCCAAGACGTCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
GTGCTCGCGCTCACTGCGGCGCTGGGAAGCAGCTGGCCTCGGGGTTAGGGGGTGTCTGTCTGGGACTGTAGGCGCGCGCCAGAACGCCCTGCGCTCTCACACCAGCGCGGGACTGTGCCTCGGGCCCGGTCCTAGATTCCGCACTTCGTTTTACTGAGTCCGCGGGGTGACAGCGACGCTTCCGGAGCTCCAAGGCACTGGAGGCAAAGTTCGTGGGAATTCCCTTCTTTCGGCTTCGCGATGGAGCTGCAAGAGCGGCAGAGGAGCTTTCTTCCTGCTCCCTTCATGCCGTCTCCCCGGGCTGTGGCAAGAACCCCCGCCCCAAGTCCAGCGCCATTTCCAGGCAGCATTTCGAGCACGCCGTTAGAGAAGGGCTTTGGTTCTAGACAAAGCTCAAGATAAGGGACAGCACACACTAGGTACCTCCAACCCCTCTCAGACCAAGGTCTGAACGGGTGACACTTGAAAGAGGGCAAAGGAAGCTAGCTGGTTCTAAAGGGGTCTCCATCACCAATCCTCAGCCTTTAACCGTTTGTTGGTCTTTTGCTGAGTTTGCGTGGGGACTAGCCATCTCAGCCCCAGGGACCTAGAAGGGAAGGGGAAGAGCTCTGTAGCCATGCGGGATGGGCTGTGGGGTGTGGGAGTTGAATCCTTGTATCTGCCTGGCTCTGGAGGAGTTCTCTGCTGTGCAGGAGGACTGCAGCAGCCCTTTCCCAGGCTAGAACTGGCATATGCCCCAGGTTGGTGTCCAGCCAGGCTCCCTGAGTTGGAGCCCAGCCCCTTGGAGCTGCAAAGAAGGCCCATCTGATGCCCTTCTCTGCTCTGCAAAACCAGCCTTCCCTGTTCCTGGCTTTTAGGCCCAGGCAGGGGCATGGATTGGAGACCTTTCCATTCAACCTCAGTCTTCTTTCCCAGTGGGCCTTACTTCCACATCCTATGGTTAGGCCAAGGTCCCAGCAGACACTGGAGAGTGGGGAAGGAAAGAAGAGAAGCCTTTATGTTTGCTTCTCCTAAATAGAGCAAAGTTCCAGATGGGACCCTCTGCCCCTGGCACAGCCAGCCTGCCCCTCAGTTGCCAAGATGTCTACTTTCTGGTGTCAGTGCCATCCTCAGGCAGCTGGGGGAGGGGTATCAACACAGGAAGTCACCTAGTCAGTCCCCTTCCAGTCAAGCTGTATCCCTGTGAATGCTCTGGGCTGACCCTGAGCTTCAGTGTGTAATTTGATACATATCTGTTGGGAATGGAAAGCTGGAGTGTGAGAGGAGCCCTACACCCCTCAGGCTAACCTACCACATCCACCCACAG
Seq C2 exon
TATGGCATCGTTCTGGATGCTGGCTCTTCACACACATCCATGTTTGTCTACAAGTGGCCAGCGGACAAGGAAAATGACACAGGTATCGTGGGCCAGCACAGCTCTTGCGATGTTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015085:ENSMUST00000028328:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.050
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=20.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCGGAGCCTAACTCT
R:
CAAGAGCTGTGCTGGCCC
Band lengths:
312-1618
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types