BtaINT0056491 @ bosTau6
Intron Retention
Gene
ENSBTAG00000048125 | ENTPD2
Description
Bos taurus ectonucleoside triphosphate diphosphohydrolase 2 (ENTPD2), mRNA. [Source:RefSeq mRNA;Acc:NM_001105648]
Coordinates
chr11:106183598-106185174:+
Coord C1 exon
chr11:106183598-106183743
Coord A exon
chr11:106183744-106185056
Coord C2 exon
chr11:106185057-106185174
Length
1313 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAC
5' ss Score
4.22
3' ss Seq
GACCCCCACCCCACCCGCAGTAT
3' ss Score
6.91
Exon sequences
Seq C1 exon
CCGTGCACGCCGGGCCCGCCTGCGCACCCATGGCCGGGAAGGCGCTGTCGCTGCTGCCACCGCTGCTGCTGGCCGCCGCCGGCCTCGCCGGCCTCCTGCTGCTGTGCGTCCCCACCCGCGACATCCGGGAGCCGCCCGCCCTCAAG
Seq A exon
GTGCACGCTCGAGCTCCCGGGCAGCCCGGCGCAGTCCGCGGGGGGCTTGGATCGAGCCGGGCTCGGCTGCGCCCGCGTGCCAGCCGGGACCCCGGGCGCTCCGCAGCCGGCCCAGCAGGGTGGGGTCCGGGCCCCTCAGCCGCGCTCCGGCCCCGGCCCAGGGCGCTGCAGCGGCGCTTCCGGGGGACGCGGTGCCGGAGGCCGACACGCCAGGATCTCTGGTCGCTGCGCCCGCCGCGGAGCTGTCTCAGAGCGGCCAACGGGGAGTCTCTCCGCACCCCCAGGGTGCCCGGGACGTGGCCGGGCCCGCGCCCCCAGCACACTCGGCCTCCCTTGGGGTTTGGCCCGGATGGGGTGCGACAGGCGCTGGGCCCAGGGACCCCTCCCCAACCTCGCCGCTGGCTCTCACGGTGCGGGGGCAGCCCTGACCGGTCCTAAAAAAAAGTTCGAGCGGACTGGGCCTGATTCCCCCACCCGCCCTCGCCAGAATCGACCTCCGGGAGCCTGGGCTCCCTTAACCCTCTACTGCACTGAGGGCCAGTCTGGTGCCCGGGGTAGACAGCGGGTGCTTGGAGCCCCAGGCACCGGGAATGCAGGTTCAGGGTGAACGAGCTGTTGCCAGGGGAGACCCCCGGCTGGGGTGGGGCCCGGCGGGCTGTTGGCTGGCTCTGGTACAGGGACTCCAGCAGGCTCCCCAGCAGGCTCCCCTTGCTGAAATGCAGGCCCCTGGGGCAGGTGCGGGGAAAGTGGCTCTGGCAAGCTGGGTGCTATCATCTTCCGACGTGCAGGAAAGGCCCCTGCGGTGTTCCAGCAGCTCTGCACAACAGCGCCCCCTGGCCCTGCCCTTGAGGCCCAGGGACGGGGCCTCTGCTCATTGGCCAGTGATCAGCCTTGGTCCTGGCTTCCCTGGGGCCTCTATTTCACATCCTCAGATGGGACAGAGATCAGAGAGACAGGACAGAGGGTGGGAAGGAAGGGCCGGTCTGAGGGGCTCTTGCTGCAGCCTGAGGACCTCAGGCCCCCCGCCAGGGCTCCCAGGGTGGCCCCCGACCCCTGACTCTGCTCGAGCCCCTCAGGAGGCTCCTGCAGTCAGCGGTGGCATGGCCGATGGCCCTCCACCTCCACCCCCATCTCTGCCCACCAAGCCATGTCCCAGCGGTTGTCCCTGGCCTTCTTGGAGCCTCAGAACTTCATTCTGAAGCTTCCAGTCTGGACACAGGGTCGGGCAGGGTGGGCCAGATAGCTGAGAGAGCCACAGGGCATGGCTTCACGCCCTGCCCCACTCCTAAGGCTGACCCCCACCCCACCCGCAG
Seq C2 exon
TATGGCATCGTCCTGGATGCGGGCTCTTCCCACACGTCCATGTTCATCTACAAGTGGCCGGCGGACAAAGAGAATGACACAGGCATCGTGGGCCAGCACAGCTCCTGCGACGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000048125:ENSBTAT00000063714:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=20.5)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development