DreINT0063210 @ danRer10
Intron Retention
Gene
ENSDARG00000033953 | entpd2a.2
Description
ectonucleoside triphosphate diphosphohydrolase 2a, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-040724-67]
Coordinates
chr5:28968537-28969988:-
Coord C1 exon
chr5:28969881-28969988
Coord A exon
chr5:28968655-28969880
Coord C2 exon
chr5:28968537-28968654
Length
1226 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
ACAGATGTGTTTGTCTCCAGTAT
3' ss Score
6
Exon sequences
Seq C1 exon
ATGCAATTGCAAACATGTACTATTATTGCAGGTCTATTTGTTTCATTTGTTGGCATCCTTTTGCTCGTCGTTAATACCGAAGACTTTAAAGAACCAGCGCAGCTCATG
Seq A exon
GTAATGACTTCTTTTTGTTATTGTGTTGTTGTTGTTATAAAGTAAAATACTCACACTAATAAGCTGTCAAGCCAAAAGAACGTTTCAGCTTTCCGATGAGATATGAATTTTAAAAAATTCTTATGTGTCGAGCAAAAAATTTGCCTGGCATGTGGCAGGCAGCCATTGAATCTCAGCTGGCAGCTTTAGTGACAGTGTTGACTTGCTGCTTATGAATTGGAATAACGATAGTCACAAGCAGGCATTCAAATCATTCACGTGAAAGCTCTTATAAAATAAAAGTGAACTCAAGAAAAAAAAAAAATATTTTTTTTTGCAAGTTAAAATAAATTAAACTAGAGCTGATAACATTCTGTAGTGCATTTAGTTCTTTTTTAAGACCATTTGTTTAAGGACATCTTCTTGGGCTCTTTTAATGCTTTTAAATGTTTTCCTGCATTTATGGGCTGCATCACCCATGTATTCAGGTAGTTCCACATGATGCGATTTACTTTCTATGTGTGATTTGGTTGGACAGAAATCACAAGACTGAATATTCTGCTTAGCCAATCCACATAGATAAGAAAAAATCAAGGTCGAAGAAAAGCAGTGAAGTAAAAGTACCCATACAGCACTAAAAATGTACTCAATTGAAAGTAAAAGTACACACTTTTAAAACTACGTTGCAATTTCTGAGAAACACTACTCAATTACAGTAGTTTGAGTATTTGTAATTTGTTACTTGACACCACTGAATATTTCAAATAAACATTCCATCCATCTGCATAAAATATAATAAACTAGATAAATACAAAACAAAGGATATAAAACAGAAAAACAAATTGTGCTTTATATATTTTTTCCAAGTCTTAAGTAGTTAGACATTGAATTATCCAATGTAAAGTAGCTCTTCACTATATATAAATTAAATGCAATTAATCTTTGTTAATGCTAAAATTATATAATTTCTTGCACCCTCATGCTTTAAACTCACTTATGTTAACATCATAACAGAAAAAAAGCTCATGAAAATTTTGAACTTTAACTATACAATGGCTAAACTTTGCAACTAAGTAAAAAAAAACCACATGCATTTTAAATTGTGGTCACCAATAATCCCCATCCTGAGATGTGACTATTGCGGATGTGCACATTTCAATTGTTTATGCTGAAGTGACATATGGTGCAGCCCTAAATGAATCCAAGACAAGTTTGTGGAAAATGTTAACAGATGTGTTTGTCTCCAG
Seq C2 exon
TATGGAATAGTTCTGGATGCTGGATCCTCTCATACGTCCATGTTTATCTACAAATGGCCAGCAGATAAGCAGAACGGCACTGGCATTGTCAGTCAGCACAGCGAGTGTCGTGTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033953:ENSDART00000043259:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0115012=GDA1_CD39=PU(1.9=22.2)
A:
NA
C2:
PF0115012=GDA1_CD39=FE(9.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAACATGTACTATTATTGCAGGT
R:
CTCGCTGTGCTGACTGACAAT
Band lengths:
206-1432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]