GgaALTA0004824-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16561890-16564804:-
Coord C1 exon
chr7:16564709-16564804
Coord A exon
chr7:16562013-16562015
Coord C2 exon
chr7:16561890-16562012
Length
3 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
ATGTGTTCGTGCTTTTTCAGCAG
3' ss Score
8.08
Exon sequences
Seq C1 exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
Seq A exon
CAG
Seq C2 exon
GAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-10-8,10-7-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTCAGGAAGCACAGACC
R:
GATTTCCCAGCTGTCAGGCTC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]