GgaALTA0004824-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009172 | E1BQU1_CHICK
Description
NA
Coordinates
chr7:16561890-16564804:-
Coord C1 exon
chr7:16564709-16564804
Coord A exon
NA
Coord C2 exon
chr7:16561890-16562012
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTTCGTGCTTTTTCAGCAGGAG
3' ss Score
7.28
Exon sequences
Seq C1 exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
Seq A exon
NA
Seq C2 exon
GAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-10-8,10-7-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.594 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTCAGGAAGCACAGACC
R:
GATTTCCCAGCTGTCAGGCTC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]