BtaALTA0020878-2/2 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000014405 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr2:18537861-18543605:-
Coord C1 exon
chr2:18543513-18543605
Coord A exon
chr2:18537980-18537983
Coord C2 exon
chr2:18537861-18537979
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTTTTCTTCTTTTCTCTTAGGAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
AGCATCCACATACTGGAGAGGACTTCTTCCACGAGCACCGAACCCTCTGTAAGTCGGCAACTGCTGGAACCAGAGCCGGTGCCCCTCTCTAAG
Seq A exon
GAAG
Seq C2 exon
CTGACAGCTGGGAAATTATAGAAGGACTGAAAATAGGCCAAACCAATGTCCAGAGACCAGACAAACATGAAGGTTTTATGCTAAAGAAGAGAAAATGGCCTTTAAAAGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014405-6-4,6-3-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCTGTAAGTCGGCAACT
R:
CTCTGGACATTGGTTTGGCCT
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development