GgaALTA0004824-1/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009172 | OSBPL6
Description
oxysterol binding protein-like 6 [Source:HGNC Symbol;Acc:HGNC:16388]
Coordinates
chr7:14964461-14967375:-
Coord C1 exon
chr7:14967280-14967375
Coord A exon
NA
Coord C2 exon
chr7:14964461-14964583
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TGTTCGTGCTTTTTCAGCAGGAG
3' ss Score
7.28
Exon sequences
Seq C1 exon
AGCGTTAATCTTTTGGAACGGAAGGCTTCGTCAGGAAGCACAGACCCTTCCTTAAGCAAGCAGTTCCTGGAAGCAGACCCTATCTCTCTGTCCAAG
Seq A exon
NA
Seq C2 exon
GAGCCTGACAGCTGGGAAATCATAGAGGGTCTGAAAATTGGCCAGACCAATGTACAGAAGCCAGACAAACATGAAGGCTTCATGCTGAAAAAGAGAAAATGGCCCTTAAAAGGTTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009172-4-9,4-8-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154091=PH_8=PU(16.7=35.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTCAGGAAGCACAGACC
R:
GATTTCCCAGCTGTCAGGCTC
Band lengths:
92-95
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]