RnoALTA0027692-2/2 @ rn6
Alternative 3'ss
Gene
ENSRNOG00000010812 | Osbpl6
Description
oxysterol binding protein-like 6 [Source:RGD Symbol;Acc:1308887]
Coordinates
chr3:63394442-63400815:+
Coord C1 exon
chr3:63394442-63394534
Coord A exon
chr3:63400693-63400696
Coord C2 exon
chr3:63400697-63400815
Length
4 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TTGTTTTTCTTTTCTCTCAGGAA
3' ss Score
11.15
Exon sequences
Seq C1 exon
AGCATCCACGTTCTGGAGAGAACTGCTTCATCCAGCACGGAGCCCTCCATCAGTCGGCAGCTGCTAGAGCCGGAGCCCATCCCCCTCTCCAAG
Seq A exon
GAAG
Seq C2 exon
CTGACAGCTGGGAAATTATAGAAGGGCTGAAAATAGGCCAAACCAATGTCCAGAAACCAGACAGGCACGAGGGATTTATGCTGAAGAAGAGAAAATGGCCTTTAAAGGGCTGGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010812-11-11,11-10-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF154091=PH_8=PU(16.7=36.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGTCGGCAGCTGCTAGAG
R:
TTCTGGACATTGGTTTGGCCT
Band lengths:
100-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]