GgaALTA0004881-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17484212-17485468:+
Coord C1 exon
chr7:17484212-17484284
Coord A exon
chr7:17485424-17485426
Coord C2 exon
chr7:17485427-17485468
Length
3 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTTGTTCTTTCCCTTGTAAGCAG
3' ss Score
4.2
Exon sequences
Seq C1 exon
CTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
Seq A exon
CAG
Seq C2 exon
GCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]