GgaINT0049396 @ galGal3
Intron Retention
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17484212-17485468:+
Coord C1 exon
chr7:17484212-17484284
Coord A exon
chr7:17484285-17485426
Coord C2 exon
chr7:17485427-17485468
Length
1142 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
GTTCTTTCCCTTGTAAGCAGGCA
3' ss Score
5.27
Exon sequences
Seq C1 exon
CTTGTAGAAGATTAATAGCTCTACCTACATTTGTCCACTGTAGAAGATGGGTGGATTAATTTCAAGATGGAGG
Seq A exon
GTAAGTAAAATATTTTAACTACGTAGTAATCTTTTGTTAGCTTGGCAGATGGGAGTTTGCAGGACGTGGTTCTTAATGCCTATTTGTTGACTTCAGTGATGGTTGAAAGTTACTGCTCAAGCTTTATTTCCTTTGCAGTAGCAGACCTGGCAGGGTTTGGTTGAGTTACAAAATTACTGTTTTGACTCCGAAGGGTTTTATGGCACTCAGTCATGAGAGATACAGCAGTATCTGTAACTTTAAAGATTAGAAGCTATTCTCAGTCCAAGTGGATACATTCAGACTATCATTCTGTATGTGTTTGTTAAAAAATAATGTGGTAGCTACTTGTGCAGACCTTTCTTCCTAACTGTTTTTATTGGCTTAGGTATCATTGAATAATATACTGAGTTAGCAAAAGTCATGAAGCTTTTGACTATTCTTTCTATTAGCACATGGGAGCTGTTAAGTCTAGGTTTACATCTTATGTTTTTAGAGTTAAAAAAAAAAAAATCATTTTAAGGTGAGAGTGTAGTTAAAGTTGTCAGCCCTGCTTGGGCGGGGGGAGGCTTTCCAATTCTACAGTGATTTTCATATTGGCCTTAGTCTTCAAATTTGTGGTCCAATGGGTCTGGGAAGATAATTAGTACCTTCCAATTAGGGAAGATTCTTAGGAGGTGGATTCCAGGTGGTTCCTAAGGGGAATTTTACTGGAGATGGGAGTGCTTAATTTTGCAGTTGCTTATGATTTATTTAGAGTGTGTCTTTGTTTTGAATGAGTGTTGGTAAAAAGGTTAAAAGTTCTTAGATTGTGGCTTCTTGTCTATTTTTTTTTTTCATGTTACCTCTTCCTTCCACTCATCGTTTCACTTCTTGTTTTACTTTCTACCCATGCACCTATTATTACTGCACACATGTAGGTTTTCATCTTTTGTGGTGTGGGAGTGGAGCCTTCAATCCATAGTCATGACAACTGTAAGACAGCAATGTGTTATTGTCTTCTATTTGTCACTATTAAAGTAGGAAAGATTATTATCTTTATATAAGATAGATGATATATTAATTTATTACACGTCTTTTTGTTAGGAAACTGTTAATCTACACTAATCCTCAACGTATGGCTTTAGTCAGATTAATGTCTTTGTTCTTTCCCTTGTAAGCAG
Seq C2 exon
GCAAAGCCTTCTACTGTAGAAGTATTAGAAAAAATTGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283:ENSGALT00000015103:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]