RnoINT0085901 @ rn6
Intron Retention
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61486113-61488758:-
Coord C1 exon
chr3:61488670-61488758
Coord A exon
chr3:61486155-61488669
Coord C2 exon
chr3:61486113-61486154
Length
2515 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TATTTCTGTTTCTAAAACAGGCA
3' ss Score
8.3
Exon sequences
Seq C1 exon
CTGTGACTTCTTTTGGACAACTCATGATATTTATTATTGTGCCAAGTTTCTACAGATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
GTAAGAAAAAGTTTTTTTTATTGCTAGTTTTTAAAATCTGACATAAAAGTATTATAGAGATTTTTCACAAAGTTATCCTTTGGAGTGTGCTCTTTAATGTGTTTGATATTATATATTTAATTTCATTTAACTCCATTAGAATTACTTTTTTGGATATTATTTTGGTAGCTCTATTTTATGGGTATCAAATATGTCTAGTAATTTATTTTTATTTGTGTATTTTATGCAAGTACTTTTCTTCTCATACTGCCCAAGTTCCAAGTTTATTCTAAAAGTAGTTGAAATTAAAAATTTTATACCATACTTAAGGTTGTACTGTACCATCTATCTAATCTGTCCATCTGTCTATCTTGGAGATGGGTTTCACTGTGCAGCCTTGAACTCACAAGGCTCTTTTCCTGTCTTTTCTGTTATTAAAGGAATTTTTGTTTGTTTTGTTTTGCTCTCTTATTAGCATGTCACATAAATTTACTGATACCACGCGAAATATGCCTTTAAGAGTTATTGGTTGAACAAAATAAAAATGCAGATTTTATAAGATAAGCCTTTAGAGAAAGTATCTCAAATTTAGAGATATAAAATATAAATTATATTGATAAATTGTACTATAAGAAGAGATAATGTAGTCTAAGACAAACTAATTTTCCTTATTCCTTATAATAAGAGTCCAGTAGTACTTAGTATATAATTTAGCTCTTGACTTGTTCGATTAAATTCATGTTTTAGATTTGTGTTATATTGACTTTCTTTTTAAAAAAATCCATAGGTAAAATAGCATATTTACTGTATGCAACATGATGTTTTAAAGTGTATACATTACATCGTTTAGGGATAGTGAATTAACATATGCATTAGCTCACATAATTACATTTTTTGTGATGAGAAATCTAACATTCTGTCTGTTAGTATTTTTCAAGAATATAGTATATCAGGGCTAAAGAGATGGTTAAGTGGTTAAGAGTATCTGACTTGGTGTTCTTGCAAAGGACTGGAGTTCAGTTCCCAGTGCCCATATCAGTTTTTTCACAACTGCATGGAGCTCCAGTTTCATGGATTTGGTACCTCTAGCTTCTCATGATAGCTGAACTCATGTAACTATACACAGAAACACATGTATATGCAAACTTTAAAATGAAATAAACTCATAAAAAGAAGACAGTTATCATTATAAGCTCTAGTCACAATGCTGTACCATTTGTAGAACTTACTCCACATATTTTGTATCCTTTGACCCCCAAAGCTTTCAAGTCCTCAACTCTGTACCTACAGTTTCCTTAGAGTTTTTACTTTCTACTTCTATGGGATCCCCCTATTTCATTCCACAGATGAATGAAATGACTCCTCTTTACAAATCTTTGACAGAGCCAGGCATGGGGACTCATGCGTTTAGTCTCAGCACTTGCGAGACAGAGGTAGGTGAATCTCTGAGTTTGAGGTCAGCCTGGTCTACAAAGTGAGTTTTAGGACAGCTAGCACTGTCACACAGAGAAATCCTGTCTCAAAGAACAAAATAAAGCAAAGATAAAAACAACGATAACAACAAAAAATTATGACAGGCTGAGAATCAAATTATCATTATTTTGTTTTCTTATTTGGTTGAATTATATGAAATTGCTGATATTCTACTTTGACATAGAGACATGGCAACTTTACATGATTCAATCTTATGTTATCAACTCTTCTAGGGATATAAATACTGGTATTCATTACTGTCTTGGTAAATATTTTCTCAATTGCCATTTAAACTATTGTGGCTTATATAGAAATACCTTTGGCAAATAATTTCTGCTACTATAAAGTATCCTTTTATATTCTTTAAAAATTTCATTTTTTCAAAAGCCGTGTACTTAGGGCTGGAGAGATGGCTCAGAGGATAGAGCACTGATTGTTCTTGTGGAGGACCCTTGCTCAATTTCCAGCTCCTAGTTGGTGGCTCACAACTGACGCTAACTTCAACTTCAGGAGATTCAGTGCCTTCTTCTGGCCTCTTTGGCACATGGATGCACATGGTATACAGATACAGGCAGGCACACATCTATAATCATTTAAAACAATCAAGCAAACAAAATCACTTCTGAAACTTTAGGTATCACAGTGAAGGTAGTCTTTTTTTTTTTTCTTTTAATCTCCGGAGCTCTGGGGGTTTCAATACTGAAATCAGTAAGTGTGCTGCTGGCACTGAGCCTGAGTATTACTGAATTAGACTGTCTTTAGCTCATGAATCTTTTGGTATATAATATGTTTCTCTAGAAAAATCTATTCTCTTGAGGTTAAGAATGGTAAAAGTAGAGCTATCAAAGTCAAGTTTCAGGAAAAGTTATTTTAAGAATCTTACATAGTTTGGTAATTATAATTTTCCATTATAGTTATGAACAGGTAGACCTATAGCTTGGAACATTGAGAAACCTATTTGTGAATTAAAATGTTCATTAATGACTATATAAACCTGTGTTTTTAACAAAATGTTTGTGGTAATAATTTTTAATGCCATGTCTTATTTCTGTTTCTAAAACAG
Seq C2 exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593:ENSRNOT00000068018:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF136871=DUF4153=PU(8.9=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]