HsaINT0087118 @ hg19
Intron Retention
Gene
ENSG00000144320 | KIAA1715
Description
KIAA1715 [Source:HGNC Symbol;Acc:21610]
Coordinates
chr2:176857910-176860374:-
Coord C1 exon
chr2:176860286-176860374
Coord A exon
chr2:176857952-176860285
Coord C2 exon
chr2:176857910-176857951
Length
2334 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
TGTTTCTGTTTGTATAACAGACA
3' ss Score
8.4
Exon sequences
Seq C1 exon
CTGTGAATTCCTTTGGACAATTGATGATATTTATCATTGTGCCCAGTTTCTACAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
GTAAGGTACTTTTCTTTACAGCTAGTTCTTGAGTCTAATATAAAAGTGTCACATAAAGCTATTTGTGAAAGTCTCCTTTGATTATAGCCTTGAATAGTAGTTTGCTATTTTCCTTAACTTTTTTCTTCTCTTTTGAATTACTTTTCTATTTTTTTATTTTAATACTTCCATTTGTTCTGTAGGTGTCCAATGCCTCTGTTTAACAGAATTATTTCACTTGGATGTATGAATTATTTTTATTTCTGTATTTCTGTATTTGTGTGCAAATGGCTATCTTGTTTTCTTATACTTCCTAAGTTTCAAGCTTATTTGAAAGGTAGTTGAAAGTAAGTATTCTAGGCCGGGTGTGGTGGCTCACATCTATAATCCCAGCACTTTGGGAGGCTGAGGCGGGCAGATCATGAGTTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCGTAGTGTTGCGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGACAGGAGAATGGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCAAGCTTGTGCCCCTGCACTCCAGCCTGGGTGACGGAGCAAGACTCAGTCTCACAAAAAAAAAAAAAAAAAAAAAAATTCTATACAAGACTTGTTTTTTACAGACTGTATCTTTTTACTTGAAGCTTATCATAAATATTGACTAAAGTCACACTGCCTGTGCTTTTAGAAATTATAGGTTAAACAAAATTAGAAATGCAGTTTGATTTTATTGGATAAGCTTTTAGAGGAAGTATCTCAAAGTTACAGCTCGAAAATATGAATTGTATAAATTATATAACCCCGTCTCTACTAAAAATACAAAAATTAGCTGGGCATGGTGGTGGGCGCCTGCAATCCCAGCTACGCGGGAGGCTGAGGCAGGATCGCTTCCATCCAGGAGGTGAAGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCAGCCTGGGCGACAGAGCTAGACTCTGTCTCAAGAAAAAGAAAAAAAAATTATATAAATGCTCTTTTCAAAAGTAAGAGGAGATAAGGTAGTCTAGGATAAACTACTTATTTTTTTTTACTCCTTATTACCATAATAATAGAGTCTAACTATACTTGGTACACAATTTAGGTTTTGGGGTATTGCTGGAACAGCCTTGTTTTGGATCAGCATTATATTGACCCTGTTATGACCTTATAATAATCTGCCCAAGGATCAAATTTATCTCTTCTTGTTTTGTCTTTCATAATAGGTTGAACCATATGAAATTGCCAGTATTCAACTGCTTGGACTTAGCAAAATGTCAGTTTCATATGGTTAACCCTAATGTTAACAACTCTTATGGAAACTACAATGAACTGATATTCATTACCCTCTTGGATTGTTGAGTATGTAATTGGTAAATATTTTTTCAAGTGTTTTATGAGTGATTTTGGCTGGTTTTCATTCTAGATGTATAAAAAATATCATTGGCAAACAAGCTTTGCTATAATGAAGTATTCTTAGATGTCCTTTTAAAATCTGATCTGCAAAAAGTACTTTAGGAATTTAGAAAGAAGATAACCTGTTGATTTTGACCTCCAGAGTCTTAAGTGAACTTTTAGCAATAGCAAATCAGACCATTTTTAGTCTGTAATTTTTTTCAATGTGTTAATTCTTTTGAGTAATCATTCCTAAGAATTTTTTTTGGAGGAAAACGTGTGTTTTTTAAATTTTTTAATTTAATTTAATTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGATCTCGGCTCACTGCAACCTCTGGCTCCCGGGTTCAATCAATTCTCGTGCCTCAGCCTCCTGAGTAGCTGGGATTGCAAGCGCATGCCACCACGCCCAGCTAATTTTTGGATTTTTAGTAGACCAGTTGGCGAAGCTGGTCTCAAACTCCTGACCCTAAGTGATCCGCCCACCTTGGCCTCCCAAAGTGCAGGCGTGAGCCACCGTGCGTGGCCAAAATTTGTTTCTTTCTAGAACGGTGTGTTCTATTGAGGTTAAGAATGGTAAAAATTGAGCTATCAGAATTAAAAGTCTTTCTAGGATTAAAACAGTTAAGTAGGGAAATGCTTATTTCTTTAATCTTACGTAGTTCTATTTGCAATTATAATTTTTATTTAAATAAATCTTAGTTATAAACAAGAATGCATATTTGACAAGATTTGAGAAAATTTAATTTTGAAATAAATGTTCTTTAATGATTATATCAAAATGTAAAGGTTTGTGATAAGTTTTAATGCTGTCTCTTGTTTCTGTTTGTATAACAG
Seq C2 exon
ACAAAACCTTCAACTGTAGAAGTTCTAGAAAGTATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144320-KIAA1715:NM_030650:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083957=7tm_7=PU(5.0=77.8)
A:
NA
C2:
PF083957=7tm_7=FE(9.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)