MmuINT0091668 @ mm10
Intron Retention
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74570935-74573626:-
Coord C1 exon
chr2:74573538-74573626
Coord A exon
chr2:74570977-74573537
Coord C2 exon
chr2:74570935-74570976
Length
2561 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TATTTCTGTCTCTAAAACAGGCA
3' ss Score
8.07
Exon sequences
Seq C1 exon
CTGTGACTTCTTTTGGACAACTCATGATATTTATTATTGTGCCAAGTTTCTGCAAATAAAAGATGGGTGGATTATTTTCTCGATGGAGG
Seq A exon
GTAAGAAAACTTTTTCTGTATTGCTAATTTTTAAAATCTAACAAAAAGTATTACAAAGATTTTCACAAAGTTATCCTTTAGAGTATACTTTTGAATGAGTTTGAAATGATGTATTTAATTCCATTTAAGTCCATTAGAATTACTTCTTTGGATATTATTTTGGTAGTTCTATTTATTTTATGGGTATCTAATATGTCTAGTAATTTATTTTTATTTATGTATTTTATACAAGTAGTTTTCTTACAACAGTTTCATACTGCCCAAGTTCCAAGTTTATTCTAAAAGTAGTTGAAATTAAAAATTTTATACCATACTTACGGTTTTTGTATACTATTCTATCTATCTAATCTGTCTGTCTGTCTCTTTTAGAGACAGGGTTTTACTGTGCAGCCTTGAACTCAGAAATTTGTCCTGCCTCTGCTGGTATTAAAGGAATTTTTGTTTGTTTTGTTTTGCTTTTTTATTAGCATGTCACATAAATTTACTGATACCACATTAAATATGCTTTTGAGAGTTATAGGTAGAACAAAATTAAAAATGCAGATTTTATTAGATAAGCCTTTAGAGAAAGTATCTCAAATTTAGAGATATAAAATATAAATTATATTGATAAATACTCTTCTAATGTAAGAAGAGATAATGTAGTCTAAGATAAACTAATTACCTTATTCTTTATCATAATAATAGAGTCTAGTAATACTTGGTAAATAATTTAGCTTCTGACTTGTTAGATCCATGTTTTAGATTTGTGTTATATTGACTTTCTTTCTCTTTTAAAAAATCCCCCCCAAACAAATCCACAGGTAAAAACAACATATTTATTGTATATTAACATGATGTTTTAAAGTGTATACATTACATTGTTTAGCTATAGCTAATTAACATATGCATTAACTCATAATTATATTTTTTGTTGTGAGAAACATTCCCTCTGTTAGCATTTTTCAAGAATATAGTATATAGGGCTAGAGAGATGGTTAAGTGGTCAAGAGTACCTGTTCTTGCCAAGGACTAGAGTTGAGTTCCCAGTGCCCACATCAGGTCATTCACAACTGCCTGGGGCTCCAGTTTCAAGGATCTGGCACCTCTAGCCTCCCATGATACCTAAATTCGCATTCGCGGAACTACACACAGAAACATATGTATATGCATACTTTAAAATGAAATAAACTCACAAAAAGAGTATAGTTATCTTTATAAGCTGTAGTCACAACGTAGAACTTGCTATGTATTTTGTATCCCTTGACCCCCAAAGCTTTCAGCTCTTCAACTCTCTACCTCCAGTTCCCTTAGATTTCTTACTTTCTACTTGATGGGATCTCATTTTTTCATTCCACAGATGAATGAAGTGACTCCTCTTTAAAAGTCTTTGACAGAGCCAGGTGGGGGGTGCGGGCACGGTGGGGGTGGGGGAAGGGGCGCTGTTTATGCCTTTAGTCCCGCACTTGAGAAAAGGAGGCAGGTGAATCTCTGTTAAGTGAGAGGTCAGCCTGGTCTGCAAAGTGGGTTCCAGGACAGCTAGGGATGTTGTTACACAGGGAAACCCTAACTCAAAGAACAAAATAAAACAAAAACAAAAACAAAAAATTTTGACAGACTGAGATTTAATTTATTTTTTTTTTAATTTGGTTGAATTATATGAAGTTGCTGATATTCTGCTTTGACATACAAAAATGGCAATTTTTCATGATTCAATCTTACATTATCAACTCTTGTAGGGATATAATACTGTTATAAATATTTTCTCAATTGCCATTTGAACCATTCTGGCTTATATAGAAATACCTTTGGCAAATAATCTCTGCTATTAGAAAGTATTCCTATATACTCTTTAACGATTTCATTTTTCAAAAGCTGTGTACTTAGGGCTAGAGAGATGGCTTAGAGGATAGAGCACTGATTGTTCTTCTGGAGGCCCTGGCTCCATTTCCAGGACCTCGTTGGTAGCTCACAGCCAGCTATGACTCCAGCTACAGGAGATCCAGTGCCCTCTTCTGGCCTCTTTGGCACCAGGGATGCACATGTTATATAGATACACACAGCCACATATCTATAATCATTTAAATCAATCAATCAATCAATCAAACAAACAAATGAAAAAAATCCCCTCTGGAACTTTGGGAATCACAGGAAGATAGTCTATTTTTTAATTTTTAAAATTTATTTTTTACCTCCAGAGCCCCGTGGGGCGTCACTGCTGAAACCAGTTGGTAGCTGCTAGCACAGAGCCTGGGCACTACTGAACTAGACTCTCTTTATTTAGTTCCTCAATCTTTTGGTATATGAATCCCTTTGGGTGAAAATATGTTTCTCTCTATAAAAATCTGTTGAGGTTAAGACTGGTAAAAGTAGAGCTATCAAAAGTCAAAAGTTATTTCAAGAATCTTACATAGTTTGGTAATTGTAGTTTTTCAATTATAGTTATGAACAGATAGCTTGGTAACATTGAGAAACCTAGTTGAGAATTAAAATGGTCTTTAAGGACTACATAAGTGTGTTTTTAACAAAATGTTTGTTGTAACAACTTTTAATGCCAGGTCTTATTTCTGTCTCTAAAACAG
Seq C2 exon
GCAAAACCTTCAACAGTAGAAGTTCTAGAAAATATAGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207:ENSMUST00000064503:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF136871=DUF4153=PU(8.7=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types