GgaALTA0005074-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000009583 | GORASP2
Description
Golgi reassembly-stacking protein 2 [Source:RefSeq peptide;Acc:NP_001012612]
Coordinates
chr7:17671839-17672392:-
Coord C1 exon
chr7:17672269-17672392
Coord A exon
chr7:17671871-17671873
Coord C2 exon
chr7:17671839-17671870
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TGTTTTCCTGTGTGCTCCAGCAG
3' ss Score
7.26
Exon sequences
Seq C1 exon
GTTCAGCTGTCATCAGTTAACCCCTCACCGGCATTACCCCCTGGGCCAGCAGGACTCGAGCAGAGTCTGTCAGGACTTTCTATTAGCTCGCCCTCGACTACTGTCAGTAATGTTCTTAGTACAG
Seq A exon
CAG
Seq C2 exon
GAGTTCCGACAGTCCCGTTGTTACCACCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583-11-15,11-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGCAGAGTCTGTCAGGA
R:
TAACAACGGGACTGTCGGAAC
Band lengths:
93-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]