GgaINT0050564 @ galGal4
Intron Retention
Gene
ENSGALG00000009583 | GORASP2
Description
Golgi reassembly-stacking protein 2 [Source:RefSeq peptide;Acc:NP_001012612]
Coordinates
chr7:17671784-17672392:-
Coord C1 exon
chr7:17672269-17672392
Coord A exon
chr7:17671871-17672268
Coord C2 exon
chr7:17671784-17671870
Length
398 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
TTTCCTGTGTGCTCCAGCAGGAG
3' ss Score
7.21
Exon sequences
Seq C1 exon
GTTCAGCTGTCATCAGTTAACCCCTCACCGGCATTACCCCCTGGGCCAGCAGGACTCGAGCAGAGTCTGTCAGGACTTTCTATTAGCTCGCCCTCGACTACTGTCAGTAATGTTCTTAGTACAG
Seq A exon
GTCAGTATGGAAGTCACTCCCAAAATGCTCAGGTGGATTGACTTCTTTGGATTCACACGTGTTTCCATTGGTTTAATAGAGGGCAGAAGGGAAAATAAACTTCTCTCTTTCTCCTTCCCAAACTTTTCTGAACAACAAAGGCTGGAGTGCTGTAATAATGTATTTCACTTTGTAACCTGAGTGTGCTTTACTTGCTCAGAAGAGATTTGATAACGTCTATCAGAAAGAAGATGTGTGTTATTCAGAATACTGCTTTTCTTCGTCAGTGTTTTATGGTTATTTAAGGCAAATAACAAATCTCCTGTGAGCAATTATTCATTTGTACTCTCTTGAGGACTACAATCACTGAAGTGTAGTACTCTTAAAATTGACATTTGTTTTCCTGTGTGCTCCAGCAG
Seq C2 exon
GAGTTCCGACAGTCCCGTTGTTACCACCGCAGGTCAGTCAGTCCCTTACCTCCGTGCCACCAGTTAACCCAGCAACAACACTACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009583:ENSGALT00000015612:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.762 A=NA C2=0.833
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCATCAGTTAACCCCTCA
R:
CAGGTAGTGTTGTTGCTGGGT
Band lengths:
206-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]