DreINT0073964 @ danRer10
Intron Retention
Gene
ENSDARG00000015126 | gorasp2
Description
golgi reassembly stacking protein 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1659]
Coordinates
chr6:3709032-3711208:+
Coord C1 exon
chr6:3709032-3709155
Coord A exon
chr6:3709156-3711121
Coord C2 exon
chr6:3711122-3711208
Length
1966 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATA
5' ss Score
4.58
3' ss Seq
ATCATTGTGATTTTTGTCAGGCG
3' ss Score
5.03
Exon sequences
Seq C1 exon
GTTCAGCTCTCCGCAGTAACTCCGCCCCCTGTGTCACAGCCTCTTCCCACAGGCCTCGAGGACAGTCTGTCTGGCCTGTCACTCAGCTCTGCCCCGCCCACAATTCCCAGCGAGCTCCACACAG
Seq A exon
GTGATACACCTTTATTCTACACTTTAAATGTTTTTCTACGTGTCACTATAAATCATAATATATTGATATTATGAAAAGCCTGTATTGTGTTATTTTAAGGCTTCCTAATTTTGTTTTGGAAAAACAAAGTGGTGTGTTCAACAATCCAAGTAGGTTTCCCTGCAGCCTGGAGACCCTCATGTGGGAGAGATTATGTCGCAAGTAGGCTGGGTTTAGGGTTGGTGTAGGTGTAGTAGACATTAATAAAACACAACGGGTTACTGTGAGATTGGGCTTAGGTTTGAGATATGTGTATAGGTTAATAAAACAACGGGTTACTGTGAGGTTGGGGTAGGTGTAGACATTCATAAAACCCAATAGGTTGGACTTTAATTAAATAATAACTTTAAATAACGAGACATTAAATAAATAAAAACTCCAGGAGGTTTGTTTGTCTACTTGGAGCTCAAGTCCCACCCAGGTGGAGCTGGCTCAGACCTCTGGTTATTGCCCTTATTCTTAAATGCGGAAGCGCTCTCGTTTTTGCGATTGTTTTAGAACTTCCAGTTCAGTTGCCTGTGGAAGAAATGACTTTAGATTTTTAAAATTTTTATCAAAATAAACTGTCAAATCATACATACAGTACAGTCGAGGTCAACAGTTATAAGATTAATCTGAAAATTTGTCTTTCTTTATTATTAATTAATTTATTATTTTGCCAAAATAAGAGGGATCACACAAAATTTATTTAAAAAAAGTTTATGAAAGTTAAAAAAACAAAAGTTTATGGAAGTACAGACCTATTTCACATAAACAGAAATTTCAGATAAAATATTGGGATTAAAAATTCCTCTATATAAATTGTATATACTTGATTATAATAATTCTTAACCTTGTTAAAACTGACACAGAATATTCACATTTTTTTTGGAACTGAAATGTTTATTAATCCTTCTATCAAGATCCATTTTATACGCTATACATGTTTCTATAATTTTATTATGTATCATATTGATACATCAGGCCTTTTGCTAACTTTTTTTGTTTAAAACTATTTTAATTTTAGTTACAAAAAAAGTTTGCCCACACCATTTTATTAAAATAGAACATTTCGGGCAGTTTGTATATGTTTATTTTTTACATTTTAAACATTTTACCCTCTTTTTTTATTTCACTTTGTGAGGGGTGTAATTCAAAGACAGACCTTACACCTCACATGTGAGAAGTGATTGCATTTTCATGTTCTTATGCCCTTTAGGACTCCCATATCTATCATTTTGTTTTCACAAATGTACAAAGCAAGGCATGTCAAGGTGCTATAATCATTTAGTGAGAAAAATGAAATTGAGAAGAAATTTGGGTTGGGATGAGATGTAATTCTTTGTGGCTTAACATGCTTTTACTACTTCATACCATTTCTTTTTACTAGTTCAGAACTATGTATTTGAAATGTATTTGTTGGAAGCATGTTAATGAGGAAAAAAATCTTTCATATATTGATGGAAATATTTTGGTACTATCACTTGCCTGTTAAAAAAATATAGTTGGATTGGTGGTGGGGGGTGAGGGAGCGCAAAACTTGAACCCGCATACCCCTCAGTAAATGTGTCGGTGCACCCCTGAAGTGAATGACACTGGAAGTCTTGAGCCAAAAAGATTCAAATGGCTGTGCCCACTCGTATGAGAAGAATAAAGTGAAATTCCTTCTCCAAGAATCTGATGCTCTCTAAACCCCTCCCCCTCTGAGAGCCTACTCTGCTATGATTGGTTGTTGTTTACGGGCAGCTAATGAATACTGTTGTAGTCTGGCATTATGCTGATCTATTCAAAACCTGCATGAGTTTGTATCATAAGTCTCATTTTAGGCAGTTCAAAATTATTATTGTTTTTTTTCTGTAAAACAGTGATTCTTTACAACTTTTTAGACCTTTTATATCTGCTAACGACTGTATTACACACTACATTAAATCATTGTGATTTTTGTCAG
Seq C2 exon
GCGTTCCAACAGTCCCTCTGCTGCCCACTCATGTGACCCCTGGGCTGGGTAACCTTCCCCTCATCAACCCATCCACCAACGGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015126:ENSDART00000013743:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCTCTCCGCAGTAACT
R:
CCGTTGGTGGATGGGTTGATG
Band lengths:
206-2172
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]