MmuINT0072364 @ mm9
Intron Retention
Gene
ENSMUSG00000014959 | Gorasp2
Description
golgi reassembly stacking protein 2 [Source:MGI Symbol;Acc:MGI:2135962]
Coordinates
chr2:70522037-70526529:+
Coord C1 exon
chr2:70522037-70522160
Coord A exon
chr2:70522161-70526442
Coord C2 exon
chr2:70526443-70526529
Length
4282 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGT
5' ss Score
9.8
3' ss Seq
TTTAATGTGCTTTATTTTAGGCG
3' ss Score
9.34
Exon sequences
Seq C1 exon
GTCCAGCTGTCTTCAGTCAGTCCTCCATCTTTGTCACCACCAGGAACTACAGGAGTTGAGCAGAGTCTGTCTGGACTCTCCATTAGCTCGGCACCACCAGCTGTCAGCAATGTTCTCAGTACAG
Seq A exon
GTATGTAGAGCCGTGCTCACCTAGACGGCTTTACCCACACTCTACCCCGTGCAGGTCTTCTGTTTTGGTTAATGTTGTCTTTAACAGCTATATGGAGAGAGAATGTCCATTCCATCCAACTCACCCACTTCAAGTGGCTTTTAGTTATTCACAGAGTTATACAACTAACTTCATTGCCCCAAACTCCAGAGAAACCCCCCACTCATCTCTAGCCACTCCCTGGCTTCCATAGTCTGCCAGGCTGAAGCAGCTACTAATCTTGCCACCCATTGTGGACATTTCATAGACTGTGTAGTCTTGTGACTGTTTTGTGTTCTTAGCTCAATGTTTTCAAGGATCTTTGATATTGTTGTATACATTAGCAGTTCATTCCTTTTAATTAATAATGTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCCATCCTGGAACTCACTTTGTAGACTAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTATTGGCGTGCGCCACCACACCCAGCTAATTAATAATGTTTTATGGTATGACTGTGTTACATTTTCTTACCCATTTATCAACTGAGAGATATTTAGGCTGTTTCTGTTTGGCTTTCTAAGTAAGGCAGCCTGTACCCTTGTGAGCAAGTCTCTGAGTCTGTATGAGGCCACATTTCTGTGGCATGTTTACCCACATGCGTATGGAGTCACTTAGTCCCAACACAGTTCTTTTTTTCCCGTTTGCCATCTCCTGTTTTCTGGTTTCTCCTCTTTATAATGTCTGGAGTTGATTATATAGTGTCCATATTGCAGTCAGAAGCACTAGCCGAATTCTAACATTGTTTACTTAGGAAATATGGGAGGGAGTGTTTGTTTTTTGGTTGGTTGGTTGGTTGGTCGGCTGTTTTTTTGTTTTTGACTCATTTAGCTGTTTGTATTCAGAATTTGCTTATCCCCAACTCTGTTCGGGGTCAGACTGCCCATCAAGAAGCACTGATGGGCACGATGTCTGGAGTCGGTCATCTGGTTTAAACCCTGCCACTTCTCAGAGAGGTCGGGCTGCTCCACAAGGCAGCAGGCCAATCGGCCAAGCCATTCTGATGTAGTGAGAATGAGTCTTGGAGAAATTGACAACTCATTCTGACTGCTCTAGTCACATTACAGTTAAACCTGTACTGTGTTAGATGCACAGGCACCGAGGTCCCTGGAGCTGACGAAATGGCTGCTGGATACTGAAGAGACAAACAGGAATGAAACAATGCTTACTCACAAAAGACTGAATGTTTTCACTGTTGAGTCCATTTAAAAAGACAGTACTAACATGTTCAGTGTAGAACATGAATTTCAGACATGAAAGTGTCAATACCATGACATGTCAGAAGCAGCTTCCTGTTAGAAATGTTTTCCATCCCGACTTCTTGTTCTCAGAGAACTCCACATAGTAATTGTGGACAAAGGAAAGTGTGTTGGTTTTGTAGATGTTTTAGAATATTAAGTGGTGTTAATCAGTGTGAATTTTGTACACAGCACACACTCTCTGCCCTCTCCCACTGCCTTGTGTGATTTTTCTGCAGAAAGTATATTACCACTTAGAAGCCAAGGTTGTTATTGTTTGCTGTGTTTCATTTCTTCCCTCTCCTTCTGAAAGGTTGAATTTCTCTTTCTTCCGACTGACAAGGGCCTCAATGCCTAGAACACTATGAAGCAGACAGTGGGTACCCTCTAGCTAGAATGCCTGAACCCACCAACCATCCCACTCCCTTAAGAATCTGACAACAGGGGTGCTGGGGGGGGGTGGCTCAGCAGTTAGGGCACTGGCTGCTTTTGCAGAGGTCCTGGGTTTGATCTCCAGCACCCACATGGCAGCTCACAACTGTCTGTAACTCCTGTCCCAGGGGGTGCAACATTATTTTCTGGTATCTGAGGATACTATGCACCTATAGTACACAGACATATATGCAGGCAAAACACTCACACACATAAAGTAAATATAATTTTTTTAAAAATCTGATAACAGCAAAGAACACTCTTCTCCAAAAACTGCTAGGAACTTCCCAGGCTGAGTAAAGGCCATTCGTGGCCCTAGGTTACAATCCCTGGCTTAGATTCAGTTAGGTCAGTTAGTGTTTGCGCAGATATTTAAAAAGGAGCCTGCCAGCTCTGGGCAGGGGGTGGACACTCCCGGAGGCAACCCTCTCCAGCCAGCCCCCACTGCGCCCACTGCTGCATTCCCAGCTCTCATTTGCTTGTCCCAGGCTCTGCTTCTTCTTCCTCAGCCATAAACCCATGTAGTCGGCGATCCCGCATTCCAGTAACTAAATGGAACCACCAACCTCGCGGTTGCATATCACAATACCCAGTAAGACTCTTACAGCTTAATTAACCAATCAGATGTATGTATCAATAATATCACAACTTACAAGATGCCAGTACAATAATTCAGAGCCAATTGATAATGATAAAAGCTTTATCCCAATTAGTATAACCTTACGATACCACAACTACTTGTGGCTGGTAAACATCACACGAGGTTCATGCCTGCGGCCATCTTCTGTCTCCCCCTACCCTGGGACGCTCCCTGTATCTTCAGCTCTTAGTTCCGCCTCCCTTTTCCCTGTCCAATCACAGACCTCCTCTGTACTAATGTACAGGGCAGGGAAAATCTTGTGACAAGTTAGTTTTTGGTACAAAAAAATGAGATTTACCCTTTAAAAGGGAAGAAATATCATGTGAAGGGTTTTATTAGGATTTAAGCAAATCTATTTTTATTTTCTTTTTGTAAATTGTTTTTAGATTGTTTTTTAATGTGTATGAGTGTTTTGCCTTCACGTGTATACGTGCACCACACATGCTCCTGCTGCCCTTGGAAGTCAGAGAGGGCGTCAGATGCCCCGGAACTAGAGTTACAGACTGTTGTGAGCCCCGTGTGGGCTGTGGGAACCAAGCCCTCTGGAGGAGCAGCCAGTGCTGAGCCGTCCCTCCAACCTGTCTTCATTTCTTAAAGGCAAGATTTAAGGCAGAAATATAAAATAGTTATAACAATGCTATTGTCTGTTACTACTTAACAAGCACACACTGGTAACTGTGGGGTCCAGAAAAGAGAGGGGTCTCCTGTACTGGACTATGGCAGCCTGAGGTCCTAGAACTCTGGCCAGTGCCGTGACCAGGCTTTCTCTTCTCTGTTCATCTCTTTCTTTTCTTTCCTTCCTTCTCTCCTCCCTCCCCCTCTGCCCTCTTTTGCATGTCCCCAGTTTCCTCAGGAAAGCACTTTGAACACTAGTAAATAAGGCAGCTGCCTAAGGTTGGCTCACCCTGTGAAGAGCGGTTCGCTCCTGTTGCTTATTAAAACATATCCCTGTCTGGCCCAAGCCTGGCTCAGCACGGGGCTTGAGCACCTCTCCCTGGAACACAGATGTGAGCAGCAGATGTGAGGAGACACCCTGCAGCTGGAGCCCAAGTCTAAGCACCAGTTCATTTGTTTGAAACACATGCACGTAGCTTGACGATCAGTGTGTACCGGGTTTTCAATGTGCCTTTGTTTTGACTTCCATCCCTTCTATGAGGTATGGAAGTTTCCACTTGCAGAGTCACATTGGCTCTCTAAAAAGCTTTATATTTGGTATTAACTCAGATTTTGGATTTTCAGTAAAGGGTGTTCAACATGTATTACTATTGTGACAGAAAAACCTCCCACTTGAATAGGTTAGTGCCAGTATATGGGTCTTCATCAGATGGCATCCTGAGGGTCCTTGTTTGTGGAGAATATTTCCACAGCCTCTCTTGGTACAGGTGGGCTGCACTGGGTATGTAGAAGCTAAGGCTAAAGGAAGCCTAGTCCTTCTCTGCACCTCTGGGAATCCAGGTGCTGTTTGTCTGCTGAGACAGCCCTGTGATCACCCTTGTTTCTCAGGCCGCCTTTCACTGTTCCAGGGCAGAGGGGGCTCCAGCAGCCCATGCTTGCGTGTTTGCACGAGCCTGCTCTTGATCTGACCCATCTTAGGGCAGTGACAGATTTCTTGTCCAGGGAGTCTATCCAGGGAAGGCTACACAGTTTTCTTCCCTCACCAGGCTGAGGCTAAGGTGTCTGTCAGGGCCATACATGCATTGGTGAGTTAGCTCTGAAAGGTTATACATAGTAATGATACAGCCAAGAGTTCGGCCATAGTGAAGCCGGAACAGCATCCTCCTGTATGTGATCTCTTCATATCTGGCGGTAGAATTGGTTTAAAATGATTTAATGTGCTTTATTTTAG
Seq C2 exon
GCGTACCAACTGTACCATTGTTGCCGCCACAAGTAAACCAGTCCCTTGCTTCTATGCCACCAATGAACCCAGCTACCACATTACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014959-Gorasp2:NM_027352:7
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=NA C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: