BtaINT0067993 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013218 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:HGNC:17500]
Coordinates
chr2:25572180-25575738:-
Coord C1 exon
chr2:25575615-25575738
Coord A exon
chr2:25572267-25575614
Coord C2 exon
chr2:25572180-25572266
Length
3348 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGC
5' ss Score
9.37
3' ss Seq
AGGCTGTGCTTTTATTTTAGGTG
3' ss Score
9.21
Exon sequences
Seq C1 exon
GTCCAGCTGTCCTCAGTCAATCCCCCGTCTTTGTCACCACCAGGAACTACAGAAATTGAACAGAGTCTGTCTGGACTTTCTATTAGTTCAACTCCACCAGCTGTCAGTAATGTTCTCAGTACAG
Seq A exon
GTATGCAGAAAATAAGATTTCTGTTTTCAGTCTGCTTTGTTTTACATGATATTCTTTTCTGCCTCAAGCTGTAGAATTTTAAAAATTAATTCCAGTGTACTTTGAGAACTGTAACCGTGCTCTGCATTGACAGGCCCTGTCTGAAAGCTGGTGGGTACTAAATCATCACATGCGTTTAAACCTCTTCTCAGCCAGTTTTAGACCTTGGACTTCTCCGTGTTCTACCTTTAAATTCTGTTTAATTGCTCTATTTACTCAGCAGACGATTGCATATCCCCTAACTAGTGTACCCTGGGGATACAAAAGTGAGCAGTTTACCATTCCTTTCCTAGGGGCTCAGTCTTGCTCAGGGGACATGTTCCTGTCTCTTCTTTTTCTGTACTCCTTGTTCTACCTGCTATACTCCATTTTTGCATGTTTTAGGTTTTTTTCAACAACTTTATTGAGATGTAATTCACATAGCATATAGTTTACCCATTTCCAACTGTACAATTTAGTGGGGTTTTGAGTATATTTGCAGAGTTTTGCAACCATCACCTCAGCTTAGAACATTTCACTGCCCCAAAGGAAATCCTGTACGCAGTCACTCGTTTCCCCCAGTCCCCCAAGGCCTAGGCACTTGCTAATCTACTTTCTCCTTCTAGTCTAAATAGTTCATAAAATTTGTGTGGTCGTCTGTGACCTTTCTCTGTGGCTTCTTTTACCTTGAATAGTGTTCTGTTTTCCAAGTTCATTGATGTCACAGCATATGTTAATACTTTATCTTTTTATGTTTAAATAATCCATTGCATGGGTATGCCACATTTTGTTGATGGACATTTGGGTGGTTTCTGCTTTTTGGCTATTATTGAATAATGCAGCTATGAACATTTGTGTACAAGTTTTTGCATAGACATATGTTTTCATTTTTCTTGATTATATACCCAGAAATTAGAATTGCTTGGTCACATGATACAGTTCTTAACTTGGTATGTTGACATAGTTTATTTTTCCCTTTCCTTTTTTTAAATATCTTCATCATACCAAGAGTATATTGTATACTCAATCAGTGTTGAATAAGTGGATAAAACACTGCCATGGTTTCATTTTATTTTATAGTATCCGTTTATTCTTGAGCTCTTTTGTTTAATATTTGTCTCCAGATCTGCTCATATTCCACTCTGTTCTGGAATGGACGTAAAACCACCCATCAAGATGCAGTTAAGGTCAACAATGGTCCCTAGAGCTTGTCCCCTCGGTTGAAATCCCAAATCTTTTCAGAGTCTTTGTTTTCCAAGATAAGTTTGAAATTTTTATTTTTTATAAAAAATTAAAAAGTTGAAACATACTCAAAAATAGATGAATGTTAATAAATACAGATATTCATTTGTGTAAAGAGAAGTACAACAGACCCCCACCACCCACCTTCACCAATTATCAGTATGATGACATTCATCCCTACCCCCTACTCTTTGCTGAATTTTTTCCCAGCTTTATCAAGGTATAATTTGTGTACTATAAAATTTACTTACTGAAAGTATAGAACTCAATGATTTTTAGTAAATTTATGGAGTTGTGCAGGTATCACCACAGTCTAGTTTTAGAATATTTCCTAAATGAAATTAAATATTAATGTCATCAGTATCATGTCATAGATATATCTGGAAGAGATTTTAAAGTTTATTTCATCAAGTAATGTTTGAGTCCTTTTTGTGAGATTGAGTTTTTTCACTTATATCCCATCAGATATAAGAAATGGTCCTTTAGTTTATTCTTGAATAGACTTCCCAAGGCGGCAACCAAGTCTGTGTCTGATGGCTCTCACCTGGCTTTACAGTGAGGTTCCAGTGCGTATGAGAGCGCTTCTGGCTTCAGGAGATAGCTGATGTGTCTTCAAGTTGCAGTTTCTATTTTAAATCTGCCCTCATACATGACAGTTACACTTGTGTTGTCTTATAAGCACATGTACTGAGATTCCTGGTCTTATTACATTGTAGAGAAATGGGTTATTGAATAGTAAAAGAGGTATCAATAAATCAGAAATTCCTAAAGGAGATTGAAAGAAATCAGCATTTTCACTTTGAGTAAGTAAATTTAGCATTGTGACATGAGAAACCACTTTTTGTTAGGTATTTATTTTTCAATCTTTGCTTTGATTATATTGCTGAAAAGTAGCCCAAACAGTAACTGTAGAAACATAAAAAGTATGTGTTTTTTAAAAAAAACTTCACTGTGGATTTGAAAAATTTGGATTTTCAGAAAATGAATATATCATTTTGAAATGGCATTAATCGATATGACCTCCTCACACTTCCTGTCTCCCTTTCTTTTTCTGCACTTCATCAGAATGTAAATTTACTGGGGGTAGTGATTTTTTTATTTTCTTTATTCTGTAAGTTCCTTGGTGCCTAGAACAATGTCTTGACATATAACAGGTGCCCACCCTGCCCCCAAACTTGAAAGACTTAAACATACCAACCAACCATCCAACACCTTTGAGAATCAAATAAAACAAAGAACTCCCTTCGGATTTTTCATGCCTCCAGTTTCCGCAGAAAAGTAAATATGTGACTAACTAAATTTATAAAACTGTCTGAAAATAGTTGCTTCATACTTTTAGGCACAGTTCATTCTGGCTTTAAGCAGATCTCTGTAAGACAAAATCAAGATCCATGTGCAGTATTACTGTTGTTTGGATATCAGTGAAACTTCGCACTTGAGTAGCTGGTAAGCGTTAATAGATAGCCTTTATTAGGTGGTATCCTAAGAGGTACTTGAATATAAAGAACATAAACTCCTCAAGCTAACATCAGTAGAAATGGAAATGTACTAGGCTTCAAAGGCATGTCACAGAACCAAGGCCAGAAGGAAACGGAGGTTCAGGAAGGTCATTCTCCCCATCTCTGGAGCTCCACATGCTCTTGTCTCTTTCAGGCTATCTACATCATTCTCTCTCACAGACCAGCATTCACTGTTTCACGGGGCATATAGGGTTACATGACCTTTTAGGTCAGGATCCCAGTAAAGATTGACTGGAATCTTTGTATCTCATTTCCAAAATTCCAAAAGTTTTCCAATCCAGCCCTTCTCAGGGGTGAAACTCATACCTGGTGTTACTTAGCTGGGGTGGGCTCTGTAAAGAGCCCCCCGCCCCCTTGGCCCATGCTCTACTAACAGCCCTTGCAAAGAGCAGAGGGCAGAACAGGTGGATGAGCTGTGGAGTGACACAGCTAGAGACCAGCTGACTGAATGAAGTCTCACTGAGGGAAGACCTGACCGTGGTGGGAGGGAAGGGACTGAAGACTGTCCACGATGGTCTGCTCGTTCTTTATCAACTGAAATGTTTCAAAGGCTGTGCTTTTATTTTAG
Seq C2 exon
GTGTACCAACGGTACCATTATTGCCACCACAAGTAAACCAGTCCCTCACATCTATGCCGCCAATGAACCCAACTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013218:ENSBTAT00000017590:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]