HsaINT0070801 @ hg19
Intron Retention
Gene
ENSG00000115806 | GORASP2
Description
golgi reassembly stacking protein 2, 55kDa [Source:HGNC Symbol;Acc:17500]
Coordinates
chr2:171812946-171818259:+
Coord C1 exon
chr2:171812946-171813069
Coord A exon
chr2:171813070-171818172
Coord C2 exon
chr2:171818173-171818259
Length
5103 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
AGATTGTGCTTTCTTTTTAGGTG
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTCCAGCTGTCCTCAGTTAATCCCCCGTCTTTGTCACCACCAGGAACTACAGGAATTGAACAGAGTCTGACTGGACTTTCTATTAGCTCAACTCCACCAGCTGTCAGTAGTGTTCTCAGTACAG
Seq A exon
GTGTGCAGAAAAATATATTCTGTTTTCAGTCTATTTTATGTAATATTATTGCATAGAATTTTAAAAATTGACCAGACACAGTGGCTCACACCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAGGATTGCTTGAGCTCAGGAGTTCTAAACCAGCATGGGCAATATGGTGGAACCACGTCTCTAAAAAAAAAAAACTTTTTTTAATTAGCCAGGTGTGGTGGTGTGCACCTGTAGTCCCAGCTCCTCGAGAGCCTGAGATGGGAGGATTGCTTGAGCCTTGGAGGTTGTGGCAGCAGTGAGCCGTGATTGTGCCACTGCATTCCAGCCTGGTCGACAGAGTGAAAAATTTAAAGAATTTTAAAAAATTATTTTAAAAAAATTTTTAAAAAAGAATTTAAAAAATTAATGCCAGTGTACCTTGAAAACTGCATATGTACTCTGTGTTGACAGGTCCTGGCTGTGAAAGCTTGTTCTAAATCACCATGTGGATACACACGGGGTTTAAACTTCTTCCCTGCATATTTTAGACCCTGAGCTTTCCTTAGATTCTACAACTTGTAAAGCCAGGACTCTGAGTTGAAATTCTGTTTAACTGCTCTGGTTACTCAACACGTTTGCGTGTTTCTGAAGTAGTAGGCACTGAGGATGCAAAAGTGAGTAGGAACTCCTTTCTGAGGAGCTCAGTCTTGCTTAGGGGACATGTGCCTGTCTCCTTCCTTTTCTTTTTTTTTTTGAAACAGAGTTTCACTCTTTTTGCCCAGGCCGGAGTACAATGGCATGGTCTTGGCTCACTGCAACCTCTGCCTCCCGAGTTCAAGTGATTCTCATGCCTCAGCCTCCCAAGTGGCAGGGATTACAGGCACGTGCCACCATACGGCAGCCAATTTTTGTATTTTTAGTAGAGACGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCTGCCCTCCTCGGCCTTCCAAAGTGCTGGGATTATAGGCGTGAGCCACTGCACCCAGCCTCCTTCCTTTTCTTCATCCCTTGTTCTACCTGATATAGTCCTTTTTGTTTGTTTTGGGTTTTATTTATTTATTTTAAAGCTTTCTCAAGATAAAATGCATATTACCATACAATTCACCTGCTTAAAGTATACAATCCAGTGTTTTTTTAGTGTATTTGTAGAGTTGTACAACCAATAACCTCAACCAATTTCAGAATATTGTATCACACCAAAAGAAACCCTGTACGCATTATCAGTTTTTCTGAAGTTTTAGTTTTTATGTTTTTGTAGGGCTGGGGTCTCTCTGTTGCCCAGGCTGGTCCCTAACTCCTGGCCTCAAGTGATCATCGTGCCTTGGCCTCCCAAATTGTTGGTATTACAGGTGCGAGTCATGGCTCCTAGCCTCATTAATACCTTTTATTTCTGGGCTGTCTTAAATATTTATATTCACAATTTGTTTATATCCCACTTTGTTCTGTAATGGACTTAAAACAGCCTACCAAGATGCAGTAGTAAGGTTGACAGTTTGGTGTCTAGAATTGGTCTCCTAGGTTCTCATCCCAGCTCTTTAGTCCTGGTTTTATTTCTCTAGATGAAATTTAAAATTTCAAACATACACAAAAGAGCTGGAATTGTATAATGAACCCCATCACCCAACTTTATCAATTATCAATATTGGGATATACTTCCCCTTTGCCTTCTTTGCTGGTTTTCTTTTTTTCCAGCTTTATCGATAAATAATTTGCCTACCATAAATTAACTCACAATAAGTAAACAACTAAATGATTTTTAGTAAATTCATAGAATTGTGCAGTCATCACCACAATCCAGTTTTAGAATGCTTCCTAGATGAAATTAAGTATTAATGTCATCAGTCTCTAATCATAGAGTTGGAAGGGAACTTAAAGTTTATTTCATTCAAGCAGTATGAGTCCTTTTTATGATATTACGATTTTTTGCCTACATCTCATCACATAATTCTCTAGTTTATTCCTGAATAGACTTAGTAAGGGTAGGGTAGTGTACTTCCCAAGGCAGCAGCCCATTTGAGTCTGAATTGTTCATATTTGTTTTAGAGTAAGCGTGTTTCCAGATGCTCTTTTTTTTTTTTTTTTTTTTTAAAAAAAAAAAAAACAGACTCTGTTGCCCAGGAAGGCTAGAGTACAGTGGCACTATCTCTGCCCACTGCAACCTCTGGCTCCCAGGTTCAAGCAGTTCTCCTGCCTCAGCCTAACCAAGTAGCTGTGATTGATTACAGGCACGTGCCACCACACCCAGCTAATTTTTGTATTTTTAGCAGAGATGGGGTTTTGCCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAAGTGACCCGCCCGCCTCTGCTGCCCCAAGTGCTGGGATTACAGGCGTGAGCCACTGTGCCCGGCCCTTTTTTTGAGGCAGAGTTTCACTCTTGTTGCCCAGGCTGGAGTGCAATGGCGCTATCTCAGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTTTCCTGCCCCAGCCTCCCGAGTAGCTGGGACTACAGGCGCACGCCACCATGCCCGGCTAATTGTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATTCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCATCGTGCCCGGCCCCAGATGCGCTTCTGATTTTAGGCGATAGTTGACATGTCTCTTCAAGCCCCAGTTTCTCTTCGACATTTTAAATCTTTCCTCATTACGTTGTAGTTATACTTGTATTGTCTGATAAACACATGCACGGAGCTCCCTGGCTTATGGCACTGCAGAGAAATGGCTTCTTGACTGTTAAAGACAAATGTAAATAAAGCACTAATTGCTCAAAAGAGACTGAAAGAAATTGACATCATCACTTTTGAGTAAATAAATTTAAAAAGACTAAAATGTTCTAGCATCACAACACGTGAGAAACAACTTTTTGATGGGCATTTTTCAGTCTTCACTTTTCATTATATTGCTTGCAAAGTAGCCTATACATTGTAACAGTGTAATACAGTAGCCTATATAATGTAACTGTAGAGACATAAAAGTAACTATAGAGAAATAAAAGTATATGTATTTTTAAACTTTTTTGTGGATTTGAAGATTTTTGGATTATAAAATTTTTAGAAAAGATTTTGAAGTGGCATCGATCATTGTGACCTGCTTGATTTTTCTGCAGTGTATCACCTTTTTCTTTTTTTTTTTTTTTTTTGAGACGGAGTCTTGCTCTGTCGCTCAGGCTGGAGTGCAGTGGTATGATCTTGGCTCACTGTAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAGCTGGGATTATAGGTGCTCACCCCCATGCCCAGTTAATTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTTTCCAAGCTGGTCTTGAACCCCTGACCTCAGGTGATCCACCTACCTCAGCTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGTGCCTGGCCCAAGTGTATCACCATTTTACATGCTATGTATTTTGATCTTTCTCCTTTTTCCTGCCCCTCATTAGAATGTAAATTTCCTAAAGGTTCTGATTTCTTCATGTTGTAAAGTGCCTCAGTGCCTTGAACAATGTGTAACATACAGTAGGTGCCCCCCAAAAAACTTGAATGAATGACCACACTCAACTATCCATTCAACTCCATTGAGAATCTGATGAAAGCAAAGAACCTGCCTTCGAAAAATTGTTGTATACAATTTTAGGAGCTTCACAGACCCCCTGAAGCCCACTTGTGGGCCCTAGATTTAGAATTCCTGTCTTAGATTGAGTCTTCCTGGCTTAGATTTAGTCAGTTATTTTTGAAACTTGTGAATGTATCTATCCTTTAAGAATGAAAAGAAACTTATGTGAAAGACTTTATTGGGAAAGAGAAGAAATTGGCTTAACCAATCCAAGCTGCTTTTGTTTTCTTAAAACCGAGATTTCAAAACAAATATAAAAAAATTATAGCATTGCTATTGTGTGTGACCATTAACAAAGCACACACTCACTAACATTTTGGTACAGAGTAGAGAACAGCTTCTTTTATTTCAGTGAAATTATGCAGTCTGGGATCCAGTAGAGCATTTGCCAGTGCTTCAGTTAGACTTTTCTTATTTTTGCTTGCCTCTGAATTCCGCAGAAAAGTAGATAAATGAATAAATAATAGACTGCCTGCATGGTTGGTTCATACTTTTAGGCACAATTTATTCCCGCTACCATATGTAAGCAGATCTGTAAGACAAAATCTGGAATCTATGCTAGATAAATGAAAATGAGTGCTAAATAAGTGAAAGGTGTGCTTTCATTTATTGTTTCGACATCAGCAAAACGTCCCACTGGGGTAGGTGGTAAACGTGATTAGGTGGTATCCTGAGGCTTACTTGTACGTGAGGAACGTAACCTCCTCAAGCTAATGTTAGTACACGTTTGTGTTAGACTTCAAAGGACTGTCACAGAACCTAAGGTCAAAAGGAAATGGACATTCAGGAAGCCAAGTCATTCTCTCCATCCTAGAGGTTCATCTGCTCTTTTGTCTCTTTCAGGCCATCTATGTCATTCTTTTCTTTCACAGACTAGCATTCACTGTTTCACAGGGCACATGGTCCCCCTGCAACCCCTGGCTTACGTGGCATCTTAGTTTAGGAGCCCAGTTGAGATTGACTAGAATCCTTGTGTCCCATATACAAATTTCTAAGACAGTTTTCTAATCTAGCCCTGCTTGGGTCAGGTGTAAACCTCTTGTCCAGTGAGCTGGGCTGGGGTGGGACTGCACGGCCTCTTGCCCTCTTGTCACAGGCTCTGGTAACAGCCTTTGTTGAGAGCTGTGGGCAGAGTCAGTGAATCTGCCGTAAAGGGTGATGGACAGTCAGTTGCAGCTGGAAATCGGGACCAAATGAAGACCTGACCACGGGGCAAGGAGGGACTGCAGATTGTCCTAATGTGTTCTGTTCATTTCTTGTCGACTAAATTTGTTAGAAATGAAAAGATTGTGCTTTCTTTTTAG
Seq C2 exon
GTGTACCAACAGTACCGTTATTGCCACCACAAGTAAACCAGTCCCTCACTTCTGTGCCACCAATGAATCCAGCTACTACATTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000115806-GORASP2:NM_015530:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.867
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)