GgaALTA0005529-4/4 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000010448 | LTBP1
Description
latent transforming growth factor beta binding protein 1 [Source:HGNC Symbol;Acc:HGNC:6714]
Coordinates
chr3:30551189-30554187:-
Coord C1 exon
chr3:30554020-30554187
Coord A exon
chr3:30551258-30551422
Coord C2 exon
chr3:30551189-30551257
Length
165 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TTTTCCCATCCCAAATCTAGCTG
3' ss Score
7.36
Exon sequences
Seq C1 exon
CTGATAGTCCTATCGTTGCTGAAGAGAAAGGACCCTGCTACCGGTTTGTTAGTGCAGGAAAGCAATGCATGCATCCTCTTTCTGTGCAGCTCAGCAAGCAGCTTTGCTGTTGCAGTGTTGGAAAAGCCTGGGGCCCAAACTGTGAGAAGTGCCCCCTTCCAGGAACAG
Seq A exon
CTGCTTTTAAGGAAATCTGCCCTGGTGGAATGGGTTATACGGTTTCTGGCCCTCACAGAAACAAGCTATATCATCACCCTGCAGTTAGAGTACAGCCACCTGTCATTGGCAAGACCCCGATTACTCAACCTGTTGCTAAAGGTACTTCTCCTCCACCTCTCCCAG
Seq C2 exon
CAAAGGAAGAGCCGGTGGAGGCACTGACCTTCTCACAGAAAAGTGAGCCTGACATGGCTGTGCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-27-31,27-30,27-29,27-28-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.506
Domain overlap (PFAM):
C1:
PF0068312=TB=PU(85.7=63.2)
A:
NA
C2:
PF0068312=TB=PD(11.9=6.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATAGTCCTATCGTTGCTGA
R:
TTCTTGCACAGCCATGTCAGG
Band lengths:
236-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]