GgaALTA0005530-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000010448 | LTBP1
Description
NA
Coordinates
chr3:32435399-32436185:-
Coord C1 exon
chr3:32436086-32436185
Coord A exon
NA
Coord C2 exon
chr3:32435399-32435494
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
CATTCCATGTCACGCAGTAGTGA
3' ss Score
-2.43
Exon sequences
Seq C1 exon
GAATTAGTTTCACTTGATCAAGAAAAGCAAATACTAGAGCCTGGACAGCCTCAGCTTTCTCCTGGAATTTCAACAATTAACCTGCATCCACAGTTTCCAG
Seq A exon
NA
Seq C2 exon
TGATTGAGAAAACATCTCCGCCTCTGCCTGTTGAAGTTGCTCCTGAAGTCTCTACTTCGAGTGCAAGTCAAGTAATTGCACCTACTCAAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010448-13-23,13-22-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.618 A=NA C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0764510=EGF_CA=PU(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGCCTGGACAGCCTCAG
R:
AGCAACTTCAACAGGCAGAGG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]