GgaALTA0005800-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000010943 | E1C4S3_CHICK
Description
NA
Coordinates
chr7:21104908-21117466:+
Coord C1 exon
chr7:21104908-21105030
Coord A exon
chr7:21117185-21117267
Coord C2 exon
chr7:21117268-21117466
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
CCCCTGTATTTGTGTATTAGGTG
3' ss Score
8.76
Exon sequences
Seq C1 exon
GTCTCTTTGGTTAGCTTAACAGCAAATGCATTGGGTTACTCTGAACTTGGTGCCATTAAGTCCCTTAGGACACTAAGAGCTTTGAGACCTCTAAGAGCCTTGTCACGATTTGAAGGCATGAGG
Seq A exon
GTGGTTGTGAATGCCCTTTTAGGAGCAATTCCATCCATCATGAACGTGCTTCTCGTTTGTCTTATATTCTGGCTAATTTTCAG
Seq C2 exon
CATCATGGGAGTAAATCTGTTTGCTGGGAAGTTCTACTACTGTGTTAACACCACAACTGATGAAAGGTTTGAAGTCGACCAAATCAACAATTTTAGTCAGTGCGAGGAACTCATAAAAAACAATCAAAGTGCCCGATGGAAAAACGTGAAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010943-22-25,22-24-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.5=100)
A:
NA
C2:
PF0052026=Ion_trans=FE(40.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGTCACGATTTGAAGGC
R:
TTCACGTTTTTCCATCGGGCA
Band lengths:
177-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]