Special

ENSG00000144285 @ hg38

Biotype
protein_coding
Gene Symbol
SCN1A
Description
sodium voltage-gated channel alpha subunit 1 [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr2:165989160-166149214:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
134
chr2:166043702-166043835
-
74.74
68.66
0
Alternative 5'ss
167
chr2:166043669-166043835
-
15.39
68.2
0
Exon Skipping
92
chr2:166077710-166077801
-
62.74
63.56
0
Exon Skipping
239
chr2:166041231-166041469
-
87.67
100
0
Exon Skipping
64
chr2:166007230-166007293
-
23.17
73.81
0
Exon Skipping
282
chr2:166002472-166002753
-
88.86
72.46
0
Exon Skipping
92
chr2:166052852-166052943
-
94.79
29.05
0
Exon Skipping
483
chr2:166036048-166036530
-
90.18
85.81
0
Exon Skipping
271
chr2:165994146-165994416
-
97.28
47.9
0
Exon Skipping
87
chr2:166126924-166127010
-
10.52
21.22
0
Intron Retention
14669
chr2:166058689-166073357
-
12.4
45.67
0
Intron Retention
6965
chr2:166002754-166009718
-
15.54
86.36
0
Intron Retention
2695
chr2:165999777-166002471
-
12.86
32.77
0
Intron Retention
49969
chr2:166077802-166127770
-
40.05
92.14
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000064329 Scn1a 1-to-1
Mouse mm9 ENSMUSG00000064329 Scn1a 1-to-1
Rat rn6 ENSRNOG00000053122 Scn1a 1-to-1
Cow bosTau6 ENSBTAG00000018520 SCN1A 1-to-1
Chicken galGal4 ENSGALG00000010943 SCN1A 1-to-1
Chicken galGal3 ENSGALG00000010943 E1C4S3_CHICK 1-to-1
Fruitfly dm6 FBgn0264255 para 10-to-1