Special

ENSMUSG00000064329 @ mm10

Biotype
protein_coding
Gene Symbol
Scn1a
Description
sodium channel, voltage-gated, type I, alpha [Source:MGI Symbol;Acc:MGI:98246]
Coordinates
chr2:66270778-66440840:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
51
chr2:66324604-66324654
-
81.27
49.37
0
Alternative 5'ss
84
chr2:66324571-66324654
-
18.65
49.37
0
Exon Skipping
64
chr2:66293832-66293895
-
13.93
88.76
0
Exon Skipping
142
chr2:66328405-66328546
-
95.47
30.19
0
Exon Skipping
282
chr2:66288874-66289155
-
94.28
38.39
0
Intron Retention
1126
chr2:66323445-66324570
-
12.29
33.81
0
Intron Retention
12917
chr2:66337997-66350913
-
10.28
33.34
0
Intron Retention
1097
chr2:66287777-66288873
-
9
47.16
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000144285 SCN1A 1-to-1
Human hg19 ENSG00000144285 SCN1A 1-to-1
Rat rn6 ENSRNOG00000053122 Scn1a 1-to-1
Cow bosTau6 ENSBTAG00000018520 SCN1A 1-to-1
Chicken galGal4 ENSGALG00000010943 SCN1A 1-to-1
Chicken galGal3 ENSGALG00000010943 E1C4S3_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1