Special

ENSG00000144285 @ hg19

Biotype
protein_coding
Gene Symbol
SCN1A
Description
sodium channel, voltage-gated, type I, alpha subunit [Source:HGNC Symbol;Acc:10585]
Coordinates
chr2:166845670-166930149:-
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • The Cancer Genome Atlas (TCGA)
  • Genotype-Tissue Expression Project (GTEx)
  • Autistic and control brains
  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
0
NA
-
12.45
40.98
0
Alternative 5'ss
51
chr2:166900212-166900262
-
72.08
69.03
0
Alternative 5'ss
84
chr2:166900179-166900262
-
15.47
67.41
0
Exon Skipping
64
chr2:166863740-166863803
-
20.65
72.6
0
Exon Skipping
282
chr2:166858982-166859263
-
96.93
21.05
0
Intron Retention
14669
chr2:166915199-166929867
-
13.01
45.11
0
Intron Retention
6965
chr2:166859264-166866228
-
15.54
86.36
0
Intron Retention
2695
chr2:166856287-166858981
-
12.69
47.62
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Mouse mm10 ENSMUSG00000064329 Scn1a 1-to-1
Mouse mm9 ENSMUSG00000064329 Scn1a 1-to-1
Rat rn6 ENSRNOG00000053122 Scn1a 1-to-1
Cow bosTau6 ENSBTAG00000018520 SCN1A 1-to-1
Chicken galGal4 ENSGALG00000010943 SCN1A 1-to-1
Chicken galGal3 ENSGALG00000010943 E1C4S3_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1