Special

ENSBTAG00000018520 @ bosTau6

Biotype
protein_coding
Gene Symbol
SCN1A
Description
sodium channel, voltage gated, type I alpha subunit [Source:HGNC Symbol;Acc:HGNC:10585]
Coordinates
chr2:30321635-30415283:+
Assembly

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 5'ss
14
chr2:30360205-30360218
+
17.42
36.67
0
Alternative 5'ss
65
chr2:30360205-30360269
+
71.62
55.38
0
Alternative 5'ss
98
chr2:30360205-30360302
+
9.24
30.77
0
Exon Skipping
92
chr2:30347655-30347746
+
91.22
18.62
0
Exon Skipping
348
chr2:30359922-30360269
+
98.32
10.21
0
Exon Skipping
64
chr2:30399031-30399094
+
29.81
73.53
0
Exon Skipping
282
chr2:30403688-30403969
+
83.54
42.42
0
Exon Skipping
105
chr2:30410283-30410387
+
98.06
15.53
0
Exon Skipping
138
chr2:30408291-30408428
+
97.66
18.73
0
Exon Skipping
54
chr2:30406249-30406302
+
97.34
18.87
0
Exon Skipping
88
chr2:30343028-30343115
+
94.79
14.12
0
Exon Skipping
121
chr2:30340804-30340924
+
94.04
12.24
0
Intron Retention
1303
chr2:30367130-30368432
+
4.76
26.83
0
Intron Retention
2279
chr2:30403970-30406248
+
8.48
22.58
0
Intron Retention
1854
chr2:30408429-30410282
+
12.23
32.61
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000144285 SCN1A 1-to-1
Human hg19 ENSG00000144285 SCN1A 1-to-1
Mouse mm10 ENSMUSG00000064329 Scn1a 1-to-1
Mouse mm9 ENSMUSG00000064329 Scn1a 1-to-1
Rat rn6 ENSRNOG00000053122 Scn1a 1-to-1
Chicken galGal4 ENSGALG00000010943 SCN1A 1-to-1
Chicken galGal3 ENSGALG00000010943 E1C4S3_CHICK 1-to-1
Zebrafish danRer10 ENSDARG00000062744 scn1lab 5-to-2
Zebrafish danRer10 ENSDARG00000086819 scn1a 5-to-2
Fruitfly dm6 FBgn0264255 para 10-to-1