GgaALTA0006055-1/3 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38448573-38450652:-
Coord C1 exon
chr2:38450547-38450652
Coord A exon
NA
Coord C2 exon
chr2:38448573-38448602
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
TCTCCTCTTTCCTTAAGCAGTTC
3' ss Score
6.99
Exon sequences
Seq C1 exon
GTGTGTATGTTCTGAGCCTCAGAACCCCAGCAACGAAACCTTGAAGGCTTGGGGGAAGATGAATAAATCTGTGGAAACTATCGCATGGAGTAACCTTACAGTAACT
Seq A exon
NA
Seq C2 exon
TTCAAGACCAAGCGCTATTTCCCAACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-35-32,35-31,35-30-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)
A:
NA
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAACCTTGAAGGCTTGGG
R:
AGTTGGGAAATAGCGCTTGGT
Band lengths:
101-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]