Special

MmuALTA0016754-1/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15603723-15605211:+
Coord C1 exon
chr14:15603723-15603828
Coord A exon
NA
Coord C2 exon
chr14:15605182-15605211
Length
0 bp
Sequences
Splice sites
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
3' ss Seq
TGTCTTCATTCCTCAAGCAGTTT
3' ss Score
5.15
Exon sequences
Seq C1 exon
ATGTGTATGTGCTGAGCCATCTAACCCTAGCAACGAAACTCTAGAACTGTGGAAGAGGAAGAATATAACAGCATACAGTGTTTCCTGGGGCAACCTTACTGTTTCT
Seq A exon
NA
Seq C2 exon
TTTAAGACCAAGAGATATTTTCCTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-22-24,22-23,22-22-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
Protein isoform when splice site is used (No Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0095516=HCO3_cotransp=FE(6.8=100)

							
A:
NA

							
C2:
PF0095516=HCO3_cotransp=FE(10.3=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000058313f1079A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000058313, ENSMUSP00000088071, ENSMUSP00000128870
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr3:27439713-27439714 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr22:1779843-1779844 
Chicken
(galGal4)
chr2:39032039-39032040 
ALTERNATIVE
GgaALTA0006055-1/2
(SLC4A7)
Chicken
(galGal3)
chr2:38448573-38448602 
ALTERNATIVE
GgaALTA0006055-1/3
(SLC4A7)
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCAACGAAACTCTAGAACTGTGGA

				
R: 
TGGTAGGAAAATATCTCTTGGTCTT

				
Band lengths: 
105-108

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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