GgaALTA0006070-1/3 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011432 | CDC42BPB
Description
CDC42 binding protein kinase beta (DMPK-like) [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr5:49816627-49817949:-
Coord C1 exon
chr5:49817832-49817949
Coord A exon
NA
Coord C2 exon
chr5:49816627-49816714
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAA
5' ss Score
4.78
3' ss Seq
GCGTCTTACCTGCTGCACAGGAT
3' ss Score
6.23
Exon sequences
Seq C1 exon
GGAAATGCTTAGAGATCCGGAGCTGAGGTCAAAGATGATTTCTAACCCAACGAATTTCAACCACGTGGCTCACATGGGACCAGGAGATGGAATGCAGGTTCTCATGGACCTCCCGCTG
Seq A exon
NA
Seq C2 exon
GATGAAAAACCATGTCCGTCTACAACTAACCTCTCACGGCAGCAACAGCAGCAGAGAAGCAAAACCTATATTTCGTGGCCCTCATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011432-55-63,55-62,55-60-1/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(40.9=67.5)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAATTTCAACCACGTGGCT
R:
GCTGCCGTGAGAGGTTAGTTG
Band lengths:
112-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]