HsaALTA1055224-1/4 @ hg38
Alternative 3'ss
Gene
ENSG00000198752 | CDC42BPB
Description
CDC42 binding protein kinase beta [Source:HGNC Symbol;Acc:HGNC:1738]
Coordinates
chr14:102938320-102939727:-
Coord C1 exon
chr14:102939610-102939727
Coord A exon
NA
Coord C2 exon
chr14:102938320-102938390
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGCGT
5' ss Score
8.29
3' ss Seq
GTGCTGTGCCCCCCTCCCAGGAG
3' ss Score
8.73
Exon sequences
Seq C1 exon
AGAGATGCTTAGAGACCCAGAATTGAGATCCAAAATGATATCCAACCCAACCAACTTCAACCACGTGGCCCACATGGGCCCAGGCGACGGCATGCAGGTGCTCATGGACCTGCCTCTG
Seq A exon
NA
Seq C2 exon
GAGGAAAGGCCGGGCCCCGCTCCCACCAACCTGGCTCGCCAGCCTCCATCCAGGAACAAGCCCTACATCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198752-88-84,88-83,88-82,88-81-1/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0078623=PBD=PU(64.3=67.5)
A:
NA
C2:
PF0078623=PBD=PD(31.0=36.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAACCAACTTCAACCACGT
R:
CGAGCCAGGTTGGTGGGAG
Band lengths:
111-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains