GgaALTA0006073-1/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011439 | RBMS3
Description
NA
Coordinates
chr2:39166247-39261266:+
Coord C1 exon
chr2:39166247-39166321
Coord A exon
NA
Coord C2 exon
chr2:39261100-39261266
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
TTTTCTTTTCTTTCCAGCAGTCC
3' ss Score
8.99
Exon sequences
Seq C1 exon
ATGGGCAAACGCCTGGACCAGCAGCCAATGTACCCCCAGTACACCTACTACTACCCCCACTATCTCCAAACTAAG
Seq A exon
NA
Seq C2 exon
TCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAACAACAGCAGCAACAACAGCAGTGGAGAGCAGTTGAGTAAAACCAACCTGTACATTCGAGGCCTTCCACCCGGCACCACTGACCAGGACCTTATCAAACTGTGCCAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-0-1,0-0-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.719
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=35.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCTACTACTACCCCCACT
R:
TGTTGTTGCTGCTGTTTGTGC
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]