MmuALTA0015004-1/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:117109961-117252463:-
Coord C1 exon
chr9:117251727-117252463
Coord A exon
NA
Coord C2 exon
chr9:117109961-117110115
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTTTCTTCTGTTTGCAGCAGTCC
3' ss Score
6.07
Exon sequences
Seq C1 exon
ATTTCTTTTTTTCTCCTCCTTCGCCTTTACAAGCGCCTGCGATTGACACCACTAGAGACAGGCTGGTCACAGAGCAAACTGCTTCATCCGGACTGGACCGGGCAGCTGGGAGGAACCAGGCAGGCAAGAACTGGGGAAGCAGTCTGGGGGTTTCCGCTACAGATCTCAACCCCCATCTGTTTTTGTTTTTGTTTTCTTTTTCTTTTTCTCTTTTCTTTTTGGTTCTTTTGTTTTGCTTTGCTTTGGTTTTTTGGGTTGTTTTAAATTCCTCACGGTGTTGGAACTAGTGAGGCTGGAGTCTGAGAAGCCTCAGCAGTCACGCAGACTGCCAGGGACAGTGGATTAAGAGAAAGAAGCTCGCTTGCCTGGGGCATCATACACCCTGTTATTCAGTTTCCTGCCTCGGAGATAAAGATCCCAGCTACATGGGCAAACGCCTGGATCAGCCACAAATGTACCCCCAGTACACGTACTACTGTCCTCAGTACCTCCAAACCAAG
Seq A exon
NA
Seq C2 exon
TCCTATGCACCAGCTCCCCACCCCATGGCTCCTCCCAGCCCCAGCACAAACAGCAGCAGCAACAGCAGCGGGGAACAGTTGAGTAAGACAAACCTATACATCCGAGGACTTCCACCAGGCACCACTGACCAGGACCTCATCAAGCTATGTCAACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-6-15,6-14-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.191 A=NA C2=0.689
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=PU(30.3=38.5)
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCAGTACACGTACTACTGT
R:
CTGTTGCTGCTGCTGTTTGTG
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types