GgaALTA0006183-2/2 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27673701-27674904:-
Coord C1 exon
chr7:27674658-27674904
Coord A exon
chr7:27673892-27673894
Coord C2 exon
chr7:27673701-27673891
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
3' ss Seq
CTTGCTTCCATTTGTCCTAGAAG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GTGTCTCGAGATGGTGGCCTTGCGGTACCTACCAGCGATGTCCGAGGAGGTAGTGATACTGTAGAAGGAGGAAGGATGGCTTTAGATAACAAAACCTCCCTACTTAACACTCAACCACCCCGCGCCTTTTCAGGGCCACGTGCTCGAGAGTATAACCCCTATCCTTATTCCGACACAATTAACACTTATGACAAGACTGCCCTCAAGGAAGCAGTTTTTGATGATGACATGGATCAGCTTCGGGATG
Seq A exon
AAG
Seq C2 exon
TACCCATTGACCATTCGGATTTGGTGGCTGATCTTCTGAAAGAGCTCTCTAATCACAATGAGCGAGTGGAGGAGCGAAAAGGAGCTCTCCTGGAACTGCTGAAGATCACAAGGGAGGATAATCTTGGAGTTTGGGAGGAACATTTCAAAACCATTCTGCTTTTGCTCCTGGAAACGCTTGGAGACAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-43-54,43-53-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.928 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127172=Cnd1=PU(30.0=87.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATGGATCAGCTTCGGGA
R:
TCCTCCACTCGCTCATTGTGA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]