GgaALTA0006183-2/2 @ galGal4
Alternative 3'ss
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25599544-25600614:-
Coord C1 exon
chr7:25600501-25600614
Coord A exon
chr7:25599735-25599737
Coord C2 exon
chr7:25599544-25599734
Length
3 bp
Sequences
Splice sites
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
3' ss Seq
CTTGCTTCCATTTGTCCTAGAAG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GGCCACGTGCTCGAGAGTATAACCCCTATCCTTATTCCGACACAATTAACACTTATGACAAGACTGCCCTCAAGGAAGCAGTTTTTGATGATGACATGGATCAGCTTCGGGATG
Seq A exon
AAG
Seq C2 exon
TACCCATTGACCATTCGGATTTGGTGGCTGATCTTCTGAAAGAGCTCTCTAATCACAATGAGCGAGTGGAGGAGCGAAAAGGAGCTCTCCTGGAACTGCTGAAGATCACAAGGGAGGATAATCTTGGAGTTTGGGAGGAACATTTCAAAACCATTCTGCTTTTGCTCCTGGAAACGCTTGGAGACAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-52-62,52-61-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127172=Cnd1=PU(30.4=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATGGATCAGCTTCGGGA
R:
TCCTCCACTCGCTCATTGTGA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]