GgaEX1015613 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25599544-25600747:-
Coord C1 exon
chr7:25600699-25600747
Coord A exon
chr7:25600501-25600614
Coord C2 exon
chr7:25599544-25599734
Length
114 bp
Sequences
Splice sites
3' ss Seq
ACCACCCCGCGCCTTTTCAGGGC
3' ss Score
9.66
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
GTGTCTCGAGATGGTGGCCTTGCGGTACCTACCAGCGATGTCCGAGGAG
Seq A exon
GGCCACGTGCTCGAGAGTATAACCCCTATCCTTATTCCGACACAATTAACACTTATGACAAGACTGCCCTCAAGGAAGCAGTTTTTGATGATGACATGGATCAGCTTCGGGATG
Seq C2 exon
TACCCATTGACCATTCGGATTTGGTGGCTGATCTTCTGAAAGAGCTCTCTAATCACAATGAGCGAGTGGAGGAGCGAAAAGGAGCTCTCCTGGAACTGCTGAAGATCACAAGGGAGGATAATCTTGGAGTTTGGGAGGAACATTTCAAAACCATTCTGCTTTTGCTCCTGGAAACGCTTGGAGACAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.211
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127172=Cnd1=PU(30.4=90.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCGAGATGGTGGCCTT
R:
GTCTCCAAGCGTTTCCAGGAG
Band lengths:
234-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]