DreEX0021908 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38467586-38469644:+
Coord C1 exon
chr9:38467586-38467733
Coord A exon
chr9:38468321-38468561
Coord C2 exon
chr9:38469588-38469644
Length
241 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTTTCCTGTCGCAGACT
3' ss Score
9.99
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TATGCTGGAATATGACACTGAGAACATGAATTCAGATGAGATCTTTAGTTCATTGCGTGGCGTCACAGAAGCCATCCAGAGTTTCAGCTACCGCAGCCAAGAAGACCTGAATGAGCCAATCAGACGCGATGGAAAAAAGGATGATGCT
Seq A exon
ACTGGAAAAGAAGCAGCATCTCCGGGCTCTGATGCGAGACTGGGATTGGATGTAGTGGAAGGTGGTCGAACCGCTCTGGATAACAAGACCTCTCTTCTCAACACCCCGTCCCCGCGGTCTTTCGCTGGGCCCCGGTCCAGAGAGTTTGCACCCTACGGCTATGGAGACACAATCACAGCCTATGATAAAAGTGCCCTGAAAGAGGCCGTCTTTGATGACGATGTGGAGCAGTTCAGAGACT
Seq C2 exon
GCCGTCGGCAGGACTGTGGTGAGAACAAGATGGTGCTGCCCAAGGGCTTTTCTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280-'48-54,'48-53,49-54
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.921
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF064797=Ribonuc_2-5A=PU(18.2=73.7),PF127172=Cnd1=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTGGAATATGACACTGAGAACA
R:
CGGGAGAAAAGCCCTTGGG
Band lengths:
204-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]