GgaEX1015613 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27673701-27676407:-
Coord C1 exon
chr7:27676257-27676407
Coord A exon
chr7:27674658-27674904
Coord C2 exon
chr7:27673701-27673894
Length
247 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTGTTTGATCTCCAGGTG
3' ss Score
11.53
5' ss Seq
ATGGTTTGT
5' ss Score
4.88
Exon sequences
Seq C1 exon
TATGCTGGATTATGACACGGAGAACCTAAATTCTGATGAAATCTACAGCTCTCTTCGTGGAGTCACAGAAGCAATTGAAAAGTTTAGTTTTCGTAGTCAAGAGGACCTGAATGAACCAATCAAACGTGATGGGAAGAAAGACTGTGACATG
Seq A exon
GTGTCTCGAGATGGTGGCCTTGCGGTACCTACCAGCGATGTCCGAGGAGGTAGTGATACTGTAGAAGGAGGAAGGATGGCTTTAGATAACAAAACCTCCCTACTTAACACTCAACCACCCCGCGCCTTTTCAGGGCCACGTGCTCGAGAGTATAACCCCTATCCTTATTCCGACACAATTAACACTTATGACAAGACTGCCCTCAAGGAAGCAGTTTTTGATGATGACATGGATCAGCTTCGGGATG
Seq C2 exon
AAGTACCCATTGACCATTCGGATTTGGTGGCTGATCTTCTGAAAGAGCTCTCTAATCACAATGAGCGAGTGGAGGAGCGAAAAGGAGCTCTCCTGGAACTGCTGAAGATCACAAGGGAGGATAATCTTGGAGTTTGGGAGGAACATTTCAAAACCATTCTGCTTTTGCTCCTGGAAACGCTTGGAGACAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-'41-53,'41-52,43-53=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=0.928 C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127172=Cnd1=PU(30.0=87.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCTCTTCGTGGAGTCACA
R:
GTCTCCAAGCGTTTCCAGGAG
Band lengths:
293-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]