Special

MmuEX6026852 @ mm10

Exon Skipping

Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118570849-118581463:+
Coord C1 exon
chr1:118570849-118570999
Coord A exon
chr1:118578821-118579064
Coord C2 exon
chr1:118581273-118581463
Length
244 bp
Sequences
Splice sites
3' ss Seq
GACTTTGTGCTGTGTTCTAGGTG
3' ss Score
11.94
5' ss Seq
ATGGTCTGT
5' ss Score
2.86
Exon sequences
Seq C1 exon
CATGCTGGACTATGATACAGAGAACCTGAACTCTGAAGAAATCTACAGCTCTTTGCGTGGAGTTACAGAAGCCATTGAAAAGTTCAGCTTCCGAAGCCAGGAGGATCTAAATGAGCCAATCAAACGAGATGGCAAGAAGGATTGTGATATC
Seq A exon
GTGTCCCGAGATGGGGGAGCAGCCTCACCTGCCACCGAGGGCCGGGGAGGTAGTGAGATAGAAGGAGGCAGGATGGCTTTGGACAACAAGACCTCCCTGCTCAACACGCAGCCTCCACGTGCCTTTCCGGGGCCAAGAGCACGGGAATATAACCCGTATCCCTACTCCGACACCATCAACACCTATGACAAGACGGCTCTGAAGGAAGCAGTGTTTGACGATGACATGGAGCAGCTCCGAGATG
Seq C2 exon
TGCCCATTGACCACTCAGACCTGGTGGCTGACTTGCTGAAAGAGCTATCTAACCACAACGAGCGTGTGGAGGAGCGGAAGGGCGCACTGCTGGAGTTGCTCAAGATCACCAGGGAGGACAGCCTGGGCGTGTGGGAGGAGCACTTCAAGACCATCCTGCTGCTGCTGCTGGAAACTCTCGGAGACAAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-'97-84,'97-81,100-84
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (disopred):
  C1=0.976 A=0.995 C2=0.130
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
PF136461=HEAT_2=PU(11.9=18.8)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000042266





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000067858, ENSMUSP00000128089, ENSMUSP00000137137, ENSMUSP00000139526, ENSMUSP00000139619, ENSMUSP00000140019, ENSMUSP00000140095, ENSMUSP00000140167, ENSMUSP00000140593, ENSMUSP00000140665, ENSMUSP00000140860, ENSMUSP00000141105, ENSMUSP00000141582, ENSMUSP00000142203
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm9




Conservation


Human
(hg38)
chr2:121367588-121367831 
HIGH PSI
HsaEX6015332
(CLASP1)
Human
(hg19)
chr2:122125164-122125407 
HIGH PSI
HsaEX6015332
(CLASP1)
Rat
(rn6)
chr13:34560091-34560334 
HIGH PSI
RnoEX6043734
(Clasp1)
Cow
(bosTau6)
chr2:73516733-73516979 
HIGH PSI
BtaEX6010286
(CLASP1)
Chicken
(galGal4)
chr7:25600501-25600614 
ALTERNATIVE
GgaEX1015613
(CLASP1)
Chicken
(galGal3)
chr7:27674658-27674904 
HIGH PSI
GgaEX1015613
(CLASP1)
Zebrafish
(danRer10)
chr9:38468321-38468561 
HIGH PSI
DreEX0021908
(clasp1a)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCTCTTTGCGTGGAGTTACAGA

				
R: 
TTTGTCTCCGAGAGTTTCCAGC

				
Band lengths: 
292-536

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types





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