BtaEX6010286 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73514491-73521328:-
Coord C1 exon
chr2:73521178-73521328
Coord A exon
chr2:73516733-73516979
Coord C2 exon
chr2:73514491-73514681
Length
247 bp
Sequences
Splice sites
3' ss Seq
GAGAGTGTGCTGTGCCCCAGGTA
3' ss Score
4.96
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
CATGCTGGACTATGATACTGAAAACCTGAACTCTGAAGAAATCTATAGTTCTTTGCGTGGAGTGACAGAAGCCATTGAAAAGTTTAGTTTTCGAAGCCAAGAGGATCTGAATGAGCCCATTAAAAGAGATGGCAGAAAGGACTGCGATATT
Seq A exon
GTATCCCGTGACGGTGGCATCGCCTCCCCTGCCACCGAGGGCCGGGGCGGCAGCGAGGTGGTGGAAGGAGGCCGGACGGCTCTGGACAACAAGACCTCCCTCCTCAACACCCAGCCCCCTCGCGCCTTCCCAGGGCCACGGGCGCGTGACTACAGCCCCTACCCCTACTCGGACACCATCAGCGCCTATGACAAGACAGCCCTGAAGGAGGCCGTGTTCGACGACGACATGGAGCAACTACGAGATG
Seq C2 exon
TGCCCATTGACCACTCGGACCTGGTGGCAGACCTCCTGAAGGAGCTGTCCAACCACAACGAGCGGGTGGAGGAGCGGAAGGGCGCATTGCTGGAGTTGCTCAAGATCACGCGTGAGGACAGCCTGGGCGTCTGGGAGGAGCACTTCAAGACCATCCTGCTGTTGCTGCTCGAGACACTCGGGGACAAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-'57-53,'57-51,58-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=0.147
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF136461=HEAT_2=PU(11.9=18.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTTTGCGTGGAGTGACA
R:
ATCCTTGTCCCCGAGTGTCTC
Band lengths:
296-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]